Publications
2027
Meshfree Collocation Methods: Consistent and higher-order extensions of SPH
Conference talk, 20th SPHERIC World Conference, Rome, Italy, 1 February 2027
2026
Solving the Incompressible Navier-Stokes Equations on Oriented Curved Surfaces Discretized by Point Clouds
Spatiotemporal Control of Charge +1 Topological Defects in Polar Active Matter
Multivariate Newton interpolation in downward closed spaces reaches the optimal Bernstein–Walsh approximation rate
Chemical Reaction Networks Learn Better than Spiking Neural Networks
Machine Learning-Enhanced Hybrid Evolutionary Algorithms for Black-Box Optimization
Dresden University of Technology, Faculty of Computer Science, 2026 (Master thesis)
The influence of disorder and spatio-temporal noise on vertex models of tissue morphogenesis
Dresden University of Technology, Center for Molecular and Cellular Bioengineering, 2026 (Master thesis)
The Push-Forward Transform for Continuous and Robust Comparison of Dynamic Shapes
A Continuous and Interpretable Morphometric for Robust Quantification of Dynamic Biological Shapes
A meshfree solver for coupled bulk-surface problems with self-organizing surface geometry
Integrating Odeint time stepping into OpenFPM for distributed and GPU accelerated numerical solvers
Robust variable selection for spatial point processes observed with noise
Spatially Informed Autoencoders for Interpretable Visual Representation Learning
International Conference on Learning Representations (ICLR), 2026
Learning Robust and Interpretable Representations of Spatial Point Processes
Machine Learning-Enhanced and Hybrid Evolutionary Algorithms
Dresden University of Technology, Faculty of Computer Science, 2026 (Bachelor thesis)
Roadmap on deep learning for microscopy
Push-forward Signed Distance Morphometrics for interpretable and invariant shape analysis
Poster, General Assembly, Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI), Dresden, Germany, 22 September 2026
Push-forward Signed Distance Morphometrics for interpretable and invariant shape analysis
Conference talk, 8th International Symposium on Image-based Systems Biology, Jena, Germany, 16 September 2026
Application of LLM Agents for Long-Form Question Answering in Systems Biology
Conference talk, European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML-PKDD), Naples, Italy, 7 September 2026
Particles... Particles Everywhere!
Invited talk, Farewell Lecture, Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany, 4 September 2026
Physically and numerically consistent data-driven modeling in biology
Invited talk, AI for Science European Summer School, Athens, Greece, 16 July 2026
SI-VAE : Spatially Informed Autoencoders
Poster, AI for Science European Summer School, Athens, Greece, 16 July 2026
Quantifying and comparing dynamic biological shapes
Seminar, European Molecular Biology Laboratory (EMBL) Barcelona, Barcelona Biomedical Research Park, Barcelona, Spain, 23 April 2026
Spatially Informed Autoencoders for Interpretable Visual Representation Learning
Poster, The Fourteenth International Conference on Learning Representations (ICLR), Rio de Janeiro, Brazil, 23 April 2026
Data-Driven Inference of Self-Organization and Shape in Living Systems
Seminar, Department of Mathematics, University of Hamburg, Hamburg, Germany, 14 April 2026
A Continuous and Interpretable Morphometric for Robust Quantification of Dynamic Biological Shapes
Conference talk, IEEE International Symposium on Biomedical Imaging (ISBI), London, UK, 8 April 2026
Scientific Machine Learning Helps Unlock the Mechanisms of Living Systems
Keynote, Annual Retreat, School of Embedded and Composite Artificial Intelligence (SECAI), Radebeul, Germany, 23 March 2026
From microscopy to the physics of morphogenesis, through computation
Invited talk, Max Planck Biomedical Sciences Section Lunch, online, 11 March 2026
Combining Spatial Statistics and Self-Supervised Machine Learning for Understanding Spatial Organization
Invited talk, Center for Computational Biology, Flatiron Institute of the Simons Foundation, New York City, USA, 3 March 2026
2025
Regularized Gradient Statistics Improve Generative Deep Learning Models of Super Resolution Microscopy
Vision Transformers for Unsupervised Learning of Spatial Patterns in Microscopy-like Images
Dresden University of Technology, Faculty of Computer Science, 2025 (Master thesis)
Mechanics of knee meniscus results from precise balance between material microstructure and synovial fluid viscosity
Machine Learning-Based Analysis of Trypanosoma Morphology
Dresden University of Technology, Faculty of Computer Science, 2025 (Master thesis)
Numerical solution of scalar and vector differential equations on surface point clouds
Inverse design of mechanical metamaterials for robust and optimal solutions
Faculty of Mechanical Science and Engineering, TU Dresden., 2025 (Bachelor thesis)
GPU accelerated smoothed particle magnetohydrodynamics
Dresden University of Technology, Faculty of Computer Science, 2025 (Master thesis)
An Overview of Meshfree Collocation Methods
A Transparent and Efficient Extension of IceT for Parallel Compositing on Non-Convex Volume Domain Decompositions
Proc. Eurographics Symposium on Parallel Graphics and Visualization (EGPGV), 1–5, 2025
Content-Adaptive Vision Transformer
TU Dresden, Faculty of Computer Science, 2025 (Diploma thesis)
APR-CNN: Convolutional Neural Networks for the Adaptive Particle Representation of Large Microscopy Images
Transactions on Machine Learning Research, 2025 (5qKI2dkrjL)
Statistical Approaches to Robust Shape Regression Using Kernel Methods
Dresden University of Technology, Faculty of Computer Science, 2025 (Master thesis)
Weighted score matching inference for general point process densities
Dresden University of Technology, Faculty of Computer Science, 2025 (Master thesis)
On the Computational Power of Particle Methods
Data-efficient inverse design of spinodoid metamaterials
Mesh-free methods for the adaptive discretization and high-order approximation of dynamic surfaces
Task-Adaptive Point Cloud Subsampling
Dresden University of Technology, Faculty of Computer Science, 2025 (Master thesis)
TopoSPAM: Topology grounded Simulation Platform for morphogenesis and biological Active Matter
Morphogen gradients are regulated by porous media characteristics of the developing tissue
Development 152(13):dev204312, 2025
To the articlebioRxiv"The People behind the Paper" Interview (Open Access)Editor's Research Highlight (Open Access)To the repository
Representation Learning with VAEs: Investigating Priors, Architectures, and Classification Performance on Microscopy-like Images
Dresden University of Technology, Faculty of Computer Science, 2025 (Bachelor thesis)
Integrated molecular-phenotypic profiling reveals metabolic control of morphological variation in a stem-cell-based embryo model
A robust metric for quantifying shape similarity
Dresden University of Technology, Faculty of Computer Science, 2025 (Master thesis)
Taming the data monster in large-scale volumetric fluorescence microscopy
Invited talk, Chan-Zuckerberg Biohub, San Francisco, CA, USA, 21 October 2025
The Rise of AI in the Life Sciences: Possibilities, Promises, Problems
Invited talk, Building Bridges Conference, Latest Findings in Artificial Intelligence, Dresden, Germany, 12 September 2025
Robust variable selection for spatial point processes observed with noise
Poster, General Assembly, Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI), Leipzig, Germany, 8 September 2025
Discovering Physics from Microscopy Images, and other AI-SciFi
Invited talk, Panel Discussion, 4th annual meeting of the Bridging Nordic Microscopy Infrastructure (BNMI), Gothenburg, Sweden, 20 August 2025
Numerically solving active biological hydrodynamics in complex three-dimensional geometries
Poster, Emergence and Self-organization in Biological Systems, Munich, Germany, 18 August 2025
A mesh-free collocation method for vector fields on surfaces
Conference talk, The Third Joint SIAM/CAIMS Annual Meeting (AN25), Montréal, Québec, Canada, 28 July 2025
Point processes enhance spatial representation learning in variational autoencoders
Poster, Spatial Statistics, 15 July 2025
Adaptive Particle Discretization of Curved Surfaces
Conference talk, ECCOMAS-ADMOS 2025, European Community on Computational Methods in Applied Sciences, XII International Conference on Adaptive Modeling and Simulation, Barcelona, Spain, 9 June 2025
A mesh-free collocation method for active fluids on curved surfaces
Conference talk, The Physics of Collective Cell Dynamics and Morphogenesis, Oxford, UK, 23 April 2025
Particle Methods: Numerical Computation on Point Clouds
Invited talk, Workshop on Numerical Nonlinear Algebra in the Real World, Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany, 4 February 2025
Content-adaptive deep learning for large-scale fluorescence microscopy imaging
Invited talk, AI in Microscopy Workshop, University of Gothenburg, Gothenburg, Sweden, 9 January 2025
2024
Accelerating the Generation of Volumetric Depth Images by Optimizing Threshold Search and GPU-kernel Invocation
Faculty of Computer Science, TU Dresden., 2024 (Bachelor thesis)
Developing a classification pipeline to identify potential disease patterns in the retinal pigment epithelium
Faculty of Computer Science, TU Dresden., 2024 (Bachelor thesis)
When particle shifting is expected to improve convergence of Lagrangian smoothed particle hydrodynamics
Spatio-Temporal Control of Topological Defects in Active Matter
Technische Universität Dresden, Faculty of Physics, 2024 (Master thesis)
Evaluating Large Language Model Literature Reviews In Interdisciplinary Science: A Systems Biology Perspective
Proc. EKAW 2024 Workshops, Tutorials, Posters and Demos, 24th International Conference on Knowledge Engineering and Knowledge Management (EKAW 2024), Amsterdam, The Netherlands, 2024
Efficient content-adaptive processing of large-scale fluorescence microscopy data
Proven distributed memory parallelization of particle methods
Verifying Spatiotemporal Dynamics of Particle Methods through Model Checking
Technische Universität Dresden, Faculty of Computer Science, 2024 (Master thesis)
A high-order fully Lagrangian particle level-set method for dynamic surfaces
Automated Quantification of Photoreceptor Outer Segments in Developing and Degenerating Retinas on Microscopy Images across Scales
Self-Supervised Deep Learning for Studying Sub-Cellular Localization of Condensates
Dresden University of Technology, Faculty of Computer Science, 2024 (Master thesis)
Solving continuous reaction-diffusion models in image-based complex geometries
Learning locally dominant force balances in active particle systems
Loss of bimolecular reactions in reaction–diffusion master equations is consistent with diffusion limited reaction kinetics in the mean field limit
Continuous continuous probabilistic genotyping
Live and interactive 3D photomanipulation under the microscope using virtual reality
Proc. CHI EA ’24: Extended Abstracts of the 2024 CHI Conference on Human Factors in Computing Systems, 1–7, 2024 (ACM)
Improving Automated Identification of Trypanosoma Brucei Cell Cycle Stages through Enhanced Features and Selection Techniques
Faculty of Computer Science, TU Dresden., 2024 (Bachelor thesis)
Robust Uncertainty Quantification and Automatic Weighting of Multi-Objective and Multi-Scale Bayesian Physics-Informed Neural Networks
Conference talk, Annual Meeting of the American Geophysical Union (AGU), Washington D.C, USA, 9 December 2024
Inverse design of spinodoid metamaterials
Conference talk, International Workshop on Advancements in Mesoscale Materials Modeling (AMMM), Dresden, Germany, 2 December 2024
Evaluating Large Language Model Literature Reviews In Interdisciplinary Science: A Systems Biology Perspective
Poster, 24th International Conference on Knowledge Engineering and Knowledge Management (EKAW 2024), Amsterdam, The Netherlands, 26 November 2024
How to quantify and compare dynamic shapes?
Conference talk, Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI), Graduate School Assembly, Altenburg, Germany, 26 November 2024
Data-driven inference and physics-informed machine learning of active material models
Seminar, Yale Institute for Foundations of Data Science, Yale University, New Haven, USA, 14 November 2024
Particle Methods: Numerical Computation on Point Clouds
Invited talk, Center for Computational Mathematics, Flatiron Institute of the Simons Foundation, New York City, USA, 13 November 2024
Combining Theory and Data in Computational Morphodynamics
Invited talk, Department Seminar, Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland, 5 November 2024
A structure-preserving differentiable metric for morphogenetic dynamics
Poster, From Images to Knowledge (I2K) Conference, Human Technopole, Milan, Italy, 23 October 2024
Discovering explanatory factors of spatial localization with point process models
Poster, From Images to Knowledge (I2K) Conference, Human Technopole, Milan, Italy, 23 October 2024
Porous-media characteristics of the developing tissue shape morphogen gradients
Conference talk, Image-based Systems Biology Conference 2024, Jena, Germany, 26 September 2024
Quantifying morphodynamics in continuous space and time
Conference talk, Image-based Systems Biology Conference 2024, Jena, Germany, 26 September 2024
Porous media characteristics of developing tissue are essential for robust morphogen gradient formation
Conference talk, Physics of Living Matter 18, Marseille, France, 16 September 2024
How computer simulations help understand the role of shape and geometry in cell biology
Invited talk, Symposium "Cells and Viruses" to celebrate the 80th birthday of Professor Ari Helenius, ETH Zurich, Zurich, Switzerland, 13 September 2024
Combining Machine Learning and Numerical Analysis for Partial Differential Equations
Invited talk, Inaugural Symposium, Department of Mathematical Modeling and Machine Learning, University of Zurich, Zurich, Switzerland, 10 September 2024
Fast neighborhood iterators for particle and particle-mesh codes on parallel computers
Conference talk, 2nd NHR Conference, Simulation and AI, Darmstadt, Germany, 9 September 2024
Fast neighborhood iterators for particle and particle-mesh codes on parallel computers
Invited talk, Seventeenth International Conference Zaragoza-Pau on Mathematics and its Applications, Jaca, Spain, 4 September 2024
Multi-GPU solver for reaction-diffusion models in image-based geometries of porous media
Invited talk, University of Pau and Pays d'Adour, Pau, France, 4 September 2024
Porous-media characteristics of embryo tissue regulate morphogen gradient formation
Invited talk, Seventeenth International Conference Zaragoza-Pau on Mathematics and its Applications, Jaca, Spain, 4 September 2024
A Graph Neural Network Approach to Black Box Optimization
Poster, Annual Assembly of the School of Embedded Composite Artificial Intelligence (SECAI), Dresden, Germany, 29 August 2024
A comparison of approaches for the inverse design of spinodoid metamaterials
Conference talk, 16th World Congress on Computational Mechanics (WCCM), Vancouver, Canada, 21 July 2024
Porous-media characteristics of the extracellular space regulate morphogen gradient formation
Seminar, EMBL Barcelona, Barcelona, Spain, 17 July 2024
A Fully Lagrangian Particle Level-Set Method for Solving PDEs on Deforming Surfaces
Conference talk, 2024 SIAM Annual Meeting, Spokane (WA), USA, 8 July 2024
Computer simulation of biological tissue mechanics from microscopy data
Seminar, Institute of Cell Biology and Immunology, University of Stuttgart, Stuttgart, Germany, 27 June 2024
When Particle Shifting is Expected to Improve Convergence of Lagrangian Smoothed Particle Hydrodynamics
Conference talk, 18th International SPHERIC Workshop, Berlin, Germany, 18 June 2024
Structure preserving metric for morphogenic dynamics: How to Quantify and Compare Biological shapes and their Growth and Deformation
Poster, Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI) Dresden/Leipzig, General Assembly Meeting, Leipzig, Germany, 17 June 2024
Three-Dimensional Wrinkling and Spontaneous Flow in Active Polar Fluids
Poster, Niš School, 17 June 2024
Deep Learning for Large-Scale Image-based Systems Biology
Conference talk, Workshop Les Treilles, Deep Learning for Biology, Fondation des Treilles (by invitation only), Tourtour, France, 10 June 2024
Quantification of biological localization patterns using determinantal point processes
Poster, Workshop on Computational Models in Biology and Medicine, Center for Regenerative Therapies, Dresden, Germany, 6 June 2024
Meshfree Approaches to PDE Inference and Solution in Biological Tissue Mechanics
Invited talk, Max Planck Institute for Mathematics in the Sciences (MPI-MIS), Leipzig, Germany, 3 June 2024
Morphogen gradients are regulated by porous media characteristics of embryo geometry
Invited talk, Conference on Systems Biology of Mammalian Cell (SBMC), Leipzig, Germany, 14 May 2024
Numerically solving active biological hydrodynamics in complex three-dimensional geometries
Poster, Physics of Biological Cells: from molecules to populations, Edinburgh, UK, 14 May 2024
Live and Interactive 3D Photomanipulation under the Microscope using Virtual Reality
Poster, The ACM Conference on Human Factors in Computing Systems (CHI2024), Honolulu, Hawaii, USA, 11 May 2024
Automated Quantification of Photoreceptor Outer Segments in Developing and Degenerating Retinas on Microscopic Images across Scales
Poster, The Association for Research in Vision and Ophthalmology (ARVO) Annual Meeting, Seattle, USA, 5 May 2024
Dynamical Instabilities in 3D Cytoskeletal Materials
Conference talk, 29th Cytoskeletal Club, Liblice Castle, Czech Republic, 24 April 2024
Spatiotemporal control of charge +1 topological defects in polar active matter
Poster, International Workshop on Interdisciplinary challenges in non-equilibrium physics: from soft to active, biological and complex matter, Max Planck Institute for the Physics of Complex Systems, Dresden, Germany, 22 April 2024
Geometry is crucial for robust embryonic signaling gradients; insights from an image-based pipeline for modeling reaction-diffusion processes in porous media
Poster, 6th InterPore BeNeLux Meeting, Esch-sur-Alzette, Luxembourg, 11 April 2024
Solving active continuum mechanics of soft tissues using meshfree particle methods
Invited talk, 6th InterPore BeNeLux Meeting, Esch-sur-Alzette, Luxembourg, 11 April 2024
Numerical solution and data-driven inference of active material models in biology
Seminar, Institute of Mathematical Modeling and Machine Learning, Department of Mathematics, University of Zurich, Zurich, Switzerland, 7 March 2024
Processing very large image volumes with the adaptive particle representation
Invited talk, NHR PerfLab Seminar, Erlangen National High Performance Computing Center, Erlangen, Germany, 30 January 2024
2023
Efficient raycasting of volumetric depth images for remote visualization of large volumes at high frame rates
Proc. 16th IEEE Pacific Visualization Symposium (PacificVis), 61–70, 2023
Parallel compositing of volumetric depth images for interactive visualization of distributed volumes at high frame rates
Proc. Eurographics Symposium on Parallel Graphics and Visualization (EGPGV), 25–35, 2023
Interactive in situ visualization of large volume data
A portable C++ library for memory and compute abstraction on multi-core CPUs and GPUs
A C++ Library for Memory Layout and Performance Portability of Scientific Applications
Euro-Par 2022: Parallel Processing Workshops, Hetero-Par 13835:109–120, 2023
Architectures for Polynomial Networks
Technische Universität Dresden, Faculty of Computer Science, 2023 (Master thesis)
Design and Implementation of a Universal Parallel Particle-Based Interface for Algorithm Implementation
TU Dresden, Faculty of Computer Science, 2023 (Diploma thesis)
STENCIL-NET for equation-free forecasting from data
A unifying mathematical definition of particle methods
IEEE Open Journal of the Computer Society 4:97–108, 2023
To the articleDownload PDFarXivSupplementary MaterialTo the repository
A unifying mathematical definition enables the theoretical study of the algorithmic class of particle methods
Adaptive weighting of Bayesian physics informed neural networks for multitask and multiscale forward and inverse problems
Topological Analysis of Curved Spaces and Hybridization of Autoencoders
Technische Universität Dresden, Faculty of Computer Science, 2023 (Master thesis)
Force inference methods to estimate mechanical effects on tissue anisotropy
Technische Universität Dresden, Faculty of Computer Science, 2023 (Master thesis)
Efficient image analysis for large-scale next generation histopathology using pAPRica
A numerical solver for active hydrodynamics in three dimensions and its application to active turbulence
Entropically damped artificial compressibility for the discretization corrected particle strength exchange method in incompressible fluid mechanics
A meshfree collocation scheme for surface differential operators on point clouds
Spontaneous flow instabilities of active polar fluids in three dimensions
Efficient and Scalable Simulations of Active Hydrodynamics in Three Dimensions
An open-source pipeline for solving continuous reaction-diffusion models in image-based geometries of porous media
Gaussian Reaction Diffusion Master Equation: A Reaction Diffusion Master Equation with an Efficient Diffusion Model for Fast Exact Stochastic Simulations
Variational inference accelerates accurate DNA mixture deconvolution
Forensic Science International: Genetics 65:102890, 2023
To the articleDownload PDFbioRxivSupplementary Material 1, 2, 3, 4
Analysis of the Hamiltonian Monte Carlo genotyping algorithm on PROVEDIt mixtures including a novel precision benchmark
Global polynomial level sets for numerical differential geometry of smooth closed surfaces
Meshfree particle methods and parallel computing for 3D active hydrodynamics
Invited talk, Mechanics of Life II: Models and Methods, Center for Computational Biology, Flatiron Institute, New York City, USA, 18 December 2023
Three-Dimensional Wrinkling and Spontaneous Flow in Active Polar Fluids
Poster, Mechanics of Life II: Models and Methods, Center for Computational Biology, Flatiron Institute, New York City, USA, 18 December 2023
Scientific Computing for Systems Biology
Conference talk, Oxford-Dresden Symposium Mathematics meets Biology, Center for Systems Biology Dresden, Dresden, Germany, 6 December 2023
A meshfree collocation scheme for scalar and vector surface differential operators on point clouds
Conference talk, International Workshop on Vector- and Tensor-Valued Surface Partial Differential Equations, Faculty of Mathematics, TU Dresden, Dresden, Germany, 29 November 2023
Learning and forecasting spatiotemporal dynamics from microscopy videos
Conference talk, Symposium Machine Learning in Biology, Cluster of Excellence Physics of Life & Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany, 29 November 2023
Interactive In Situ Visualization of Large Distributed Volume Data
Conference talk, Supercomputing Conference (SC), Denver, Colorado, USA, 12 November 2023
Bioimage Informatics: Quo Vadis?
Invited talk, Life Science Zurich Seminar, University of Zurich, Zurich, Switzerland, 7 November 2023
Automated Quantification of Outer Segment Formation in Photoreceptor Development, Degeneration and Transplantation
Poster, XXth International Symposium on Retinal Degeneration (RD2023), Torremolinos, Andalusia, Spain, 23 October 2023
A continuous particle method for simulations of active fluids on curved surfaces
Conference talk, VIII International Conference on Particle-Based Methods (PARTICLES'2023), Milan, Italy, 9 October 2023
A Formal Mathematical Definition of Particle Methods Bridges the Gap between Discrete and Continuous Simulation
Keynote, VIII International Conference on Particle-Based Methods (PARTICLES'2023), Milan, Italy, 9 October 2023
A Fully Lagrangian Particle Level-Set Method for the Simulation of Dynamic Surfaces
Conference talk, VIII International Conference on Particle-Based Methods (PARTICLES'2023), Milan, Italy, 9 October 2023
A Scalable Hybrid Particle-Mesh Method for Simulating Active Fluids in Three Dimensions
Conference talk, VIII International Conference on Particle-Based Methods (PARTICLES'2023), Milan, Italy, 9 October 2023
Data-driven research in systems biology
Keynote, Annual meeting of the German supercomputing centers (ZKI-Tagung), Dresden, Germany, 12 September 2023
A mesh-free collocation method for vector surface differential operators
Conference talk, European Conference on Numerical Mathematics and Advanced Applications (ENUMATH'2023), Lisbon, Portugal, 4 September 2023
Three-Dimensional Wrinkling and Spontaneous Flow in Active Polar Fluids
Poster, The 7th International IUPAP Soft Matter Conference (ISMC2023), Osaka, Japan, 4 September 2023
Design Centering and Data-Driven Coarse-Graining
Invited talk, Summer School on Data-driven exploration and design of materials, Dresden Center for Computational Materials Science (DCMS), Dresden, Germany, 22 August 2023
Parallel Compositing of Volumetric Depth Images for Interactive Visualization of Distributed Volumes at High Frame Rates
Conference talk, Eurographics Symposium on Parallel Graphics and Visualization (EGPGV), Leipzig, Germany, 12 June 2023
Towards efficient large-scale image analysis using content-adaptive deep learning
Conference talk, Mini Conference on AI for Scientific Data Analysis, Chalmers University, Gothenburg, Sweden, 31 May 2023
A Rigorous Mathematical Definition of Particle Methods and its Application in Scientific Computing
Conference talk, 93rd Annual Meeting of the International Association of Applied Mathematics and Mechanics (GAMM), Dresden, Germany, 30 May 2023
Efficient Raycasting of Volumetric Depth Images for Remote Visualization of Large Volumes at High Frame Rates
Conference talk, The 16th IEEE Pacific Visualization Symposium (PacificVis), Seoul, Korea, 18 April 2023
microscenery: stage explorer. live, virtual reality stage navigation
Poster, Focus on Microscopy (FOM), Porto, Portugal, 2 April 2023
Development and quantification of photoreceptor outer segment formation
Poster, Pro Retina Meeting, Potsdam, Germany, 31 March 2023
Numerical Algorithms for Image-Based Biology with Large Datasets
Seminar, Wyss Center for Bio and Neuro Engineering, Geneva, Switzerland, 13 March 2023
Simulaciones de sistemas biológicos de materia activa usando particle methods y OpenFPM (in Spanish)
Invited talk, Semana de la Computación de Alto Desempeño, Datos y Arquitecturas (ECAR) - Workshop on Women in HPC, Buenos Aires, Argentina, 13 March 2023
Transition to Freedericksz-type Spontaneous Flow and Spatiotemporal Chaos in Three-Dimensional Active Fluids
Conference talk, American Physical Society (APS) March Meeting, Las Vegas, NV, USA, 5 March 2023
Spontaneous Flow in Confined 3D Active Fluids
Conference talk, Physical Biology Circle Meeting, Max Planck Institute for the Physics of Complex Systems (MPI-PKS), Dresden, Germany, 30 January 2023
Learning spatio-temporal models from bioimaging data
Keynote, King's College London, London, UK, 18 January 2023
2022
Novel ways to present proteins in VR - From interactive amino acid changing to ribbon rollercoasters
Faculty of Computer Science, TU Dresden., 2022 (Bachelor thesis)
Quantifying molecular dynamics within complex cellular morphologies using LLSM-FRAP
Evaluating tractography algorithms for pre-surgical evaluation of patients with epilepsy
Faculty of Computer Science, TU Dresden., 2022 (Bachelor thesis)
Robust Identification of Topological Defects in Discrete Vector Fields with Applications to Biological Image Data
Corvo: Visualizing CellxGene Single-Cell Datasets in Virtual Reality
OpenFPM: A scalable environment for particle and particle-mesh codes on parallel computers
Adversarial attacks for machine learning denoisers and how to resist them
Adversarial attacks and noise bias for machine learning image processing
Technische Universität Dresden, Faculty of Computer Science, 2022 (Master thesis)
Parallel discrete convolutions on adaptive particle representations of images
Model-based autotuning of discretization methods in numerical simulations of partial differential equations
Stability selection enables robust learning of differential equations from limited noisy data
Learning deterministic hydrodynamic equations from stochastic active particle dynamics
Inverse Dirichlet weighting enables reliable training of physics informed neural networks
Develop and Analyze Training of Neural Networks based on Continual Learning regime
Technische Universität Dresden, Faculty of Computer Science, 2022 (Master thesis)
Biomedical Image Reconstruction and Self-supervision of multi-spectral images through Inpainting
Technische Universität Dresden, Faculty of Computer Science, 2022 (Master thesis)
Collective cell migration during optic cup formation features changing cell-matrix interactions linked to matrix topology
Design centering enables robustness screening of pattern formation models
A Gaussian jump process formulation of the reaction-diffusion master equation enables faster exact stochastic simulations
Hamiltonian Monte Carlo with strict convergence criteria reduces run-to-run variability in forensic DNA mixture deconvolution
Forensic Science International: Genetics 60:102744, 2022
Virological Plaque Phenotype Detection in Assay Photographs using Deep Learning
Technische Universität Dresden, Faculty of Computer Science, 2022 (Master thesis)
Numerical Methods for Solving Active Matter Models of Morphogenesis
Invited talk, Center for Computational Biology, Flatiron Institute of the Simons Foundation, New York, NY, USA, 8 November 2022
Data-Driven Modeling and Numerical Simulations of Living Matter
Invited talk, Turing Centre for Living Systems (CENTURI), Marseille, France, 10 October 2022
Learning local dominant force balances in active particle systems
Conference talk, GACM Colloquium on Computational Mechanics, Essen, Germany, 21 September 2022
Workflow for image-based simulation of morphogen gradient formation
Conference talk, European ISCB Student Council Symposium (ESCS), Sitges, Barcelona, Spain, 18 September 2022
Inferring spatio-temporal models from imaging data
Invited talk, 1st Symposium on Machine Learning for Infection and Disease, Görlitz, Germany, 15 September 2022
Design centering enables robustness screening of pattern formation models
Conference talk, European Conference on Computational Biology (ECCB), Sitges, Barcelona, Spain, 12 September 2022
Image-based simulation of morphogen gradient formation during zebrafish epiboly
Poster, European Conference on Computational Biology (ECCB), Sitges, Barcelona, Spain, 12 September 2022
Numerical solution of reaction-diffusion models in image-derived curved biological surfaces
Conference talk, CurvoBio - Workshop on Curvature in Biological Systems, Harnack-Haus of the Max Planck Society, Berlin, Germany, 24 August 2022
Machine Learning for Large-Scale Volumetric Microscopy in Biology
Keynote, SPIE Emerging Topics in Artificial Intelligence (ETAI) 2022, San Diego, CA, USA, 22 August 2022
Scientific Computing for Systems Biology
Seminar, Chan-Zuckerberg Biohub, San Francisco, CA, USA, 19 August 2022
Computer Simulations of Active Material Models of Morphogenesis
Seminar, Chan-Zuckerberg Biohub, San Francisco, CA, USA, 18 August 2022
Activity Induces Chaos in 3D Active Polar Fluids
Conference talk, 19th U.S. National Congress on Theoretical and Applied Mechanics, Austin, TX, USA, 19 June 2022
Machine Learning of Spatio-Temporal Models from Image Data
Invited talk, CRC1348 Meeting "Dynamic Cellular Interfaces", Münster, Germany, 8 June 2022
Data-driven modeling of living matter
Keynote, Helmholtz AI Conference, Dresden, Germany, 3 June 2022
Development and quantification of photoreceptor outer segments
Poster, Pro Retina Meeting, Potsdam, Germany, 1 April 2022
Learning Solution Adaptive Discretization Stencils from Data
Conference talk, SIAM Conference on Parallel Processing for Scientific Computing (SIAM-PP), Seattle (WA), USA, 23 February 2022
2021
SNT: a unifying toolbox for quantification of neuronal anatomy
Numerical Stability of DC-PSE Operators
TU Dresden, Faculty of Computer Science, 2021 (Diploma thesis)
Fundamentals of the logarithmic measure for revealing multimodal diffusion
Condensate Proteome Predictor
Technische Universität Dresden, Faculty of Computer Science, 2021 (Master thesis)
Biggs theorem for directed cycles and topological invariants of digraphs
Tight Localizations of Feedback Sets
Robustness of topological defects in discrete domains
Estimation of unordered core size using a robustness measure for topological defects in discretized orientation and vector fields
Optimizing generation of Volumetric Depth Images (VDIs) by automatic threshold determination and empty-space skipping
Faculty of Computer Science, TU Dresden., 2021 (Bachelor thesis)
Distributed sparse block grids on GPUs
Proc. International Conference on High Performance Computing (ISC) 12728:272–290, 2021
Using NVSHMEM to accelerate distributed rendering and simulations
Faculty of Computer Science, TU Dresden., 2021 (Bachelor thesis)
The OpenPME problem solving environment for numerical simulations
Learning physically consistent differential equation models from data using group sparsity
Learning computable models from data
Proc. 14th World Congress on Computational Mechanics (WCCM), 1–6, 2021
Data-Driven Modeling and Simulation of Spatiotemporal Processes with a View Toward Applications in Biology
The Robustness of Deep Learning Image Denoisers
Technische Universität Dresden, Faculty of Computer Science, 2021 (Master thesis)
Optimization for simulating multicellular systems with the Software PhysiBoSS using Backtracking Adaptive Search
TU Dresden, Faculty of Computer Science, 2021 (Diploma thesis)
A C++ expression system for partial differential equations enables generic simulations of biological hydrodynamics
Particle-Based Segmentation of Extended Objects on Curved Biological Membranes
A Computational Framework for Multidimensional Parameter Space Screening of Reaction-Diffusion Models in Biology
Data-Driven Mechanistic Modeling of Biological Processes
Technische Universität Dresden, Faculty of Computer Science, 2021 (Master thesis)
Active turbulence in extensile polar fluids - A step into the third dimension
Technische Universität Dresden, Faculty of Computer Science, 2021 (Master thesis)
Eine Embedded-Boundary-Methode zur Simulation biologischer Zellen in Strömungskanälen
Faculty of Computer Science, TU Dresden., 2021 (Bachelor thesis)
Systembiologie: Wird die Informatik auch die klinische Forschung revolutionieren?
Keynote, Allergologie im Kloster. Zentrum für Rhinologie und Allergologie Wiesbaden. Kloster Eberbach, Eltville, Germany, 10 September 2021
Data-driven learning of continuum models from stochastic simulations of non-equilibrium biological dynamics
Poster, 29th Conference on Intelligent Systems for Molecular Biology (ISMB) and 20th European Conference on Computational Biology (ECCB), online, 25 July 2021
Efficient Statistical Model Selection Framework for High-Dimensional Reaction-Diffusion Systems
Conference talk, SIAM Conference on Optimization (OP21), online, 20 July 2021
Distributed Sparse Block Grids on GPUs
Conference talk, ISC High Performance, International Supercomputing Conference, online, 24 June 2021
Leveraging the Adaptive Particle Representation for efficient large-scale neurohistology
Poster, European Light Microscopy Initiative Conference (ELMI), online, 22 June 2021
Physics Informed Neural Networks for Stiff Partial Differential Equations
Conference talk, IACM Conference on Mechanistic Machine Learning and Digital Twins for Computational Science, Engineering & Technology (MMLDT), San Diego, CA, USA, 16 June 2021
The OpenPME Problem Solving Environment for Numerical Simulations
Conference talk, International Conference on Computational Science (ICCS), Krakow, Poland, 16 June 2021
A Context Aware C++ Domain-Specific Language for PDEs
Poster, Joint Workshop of the German Research Training Groups in Computer Science, online, 31 May 2021
Particle-based Segmentation of Extended Objects on Curved Biological Membranes
Poster, IEEE International Symposium on Biomedical Imaging (ISBI), online, 13 April 2021
A C++ domain specific language for scalable morphogenetic simulations
Poster, EMBO Symposium on Synthetic Morphogenesis: From Gene Circuits to Tissue Architecture, EMBL, Heidelberg, Germany, 17 March 2021
A robustness measure for singular points in pixelated orientation and vector fields and its application to defect core size estimation
Conference talk, Annual Meeting of the International Association of Applied Mathematics and Mechanics (GAMM), Kassel, Germany, 15 March 2021
Encoding Knowledge with Group Sparsity for Model Learning from Limited and Noisy Biological Data
Conference talk, 14th World Congress on Computational Mechanics (WCCM), 8th European Congress on Computational Methods in Applied Sciences and Engineering (ECCOMAS), online, 11 January 2021
Learning Computable Models from Data
Conference talk, 14th World Congress on Computational Mechanics (WCCM), 8th European Congress on Computational Methods in Applied Sciences and Engineering (ECCOMAS), online, 11 January 2021
The OpenFPM framework for particle-mesh simulations on heterogeneous parallel computers
Conference talk, 14th World Congress on Computational Mechanics (WCCM), 8th European Congress on Computational Methods in Applied Sciences and Engineering (ECCOMAS), online, 11 January 2021
2020
Letter to the Editor and Comments on: Intravital dynamic and correlative imaging reveals diffusion-dominated canalicular and flow-augmented ductular bile flux
A non-linear system patterns Rab5 GTPase on the membrane
Neural Network for Model Identification from Noisy Spatio-temporal Data
Technische Universität Dresden, Faculty of Computer Science, 2020 (Master thesis)
Bionic tracking: Using eye tracking to track biological cells in virtual reality
A Modular and Open-Source Framework for Virtual Reality Visualisation and Interaction in Bioimaging
An Architecture for Interactive In Situ Visualization and its Transparent Implementation in OpenFPM
Proc. Workshop on In Situ Infrastructures for Enabling Extreme-scale Analysis and Visualization (ISAV), SC20: The International Conference on High Performance Computing, Networking, Storage, and Analysis, 20–26, 2020
Multivariate Interpolation on Unisolvent Nodes – Lifting the Curse of Dimensionality
A robustness measure for singular point and index estimation in discretized orientation and vector fields
Multi-Objective Autotuning Targeting a Domain Specific Language for Particle Simulations
TU Dresden, Faculty of Computer Science, 2020 (Master thesis)
Interpolation of Hyperparameters for Deep Neural Nets
TU Dresden, Faculty of Computer Science, 2020 (Diploma thesis)
Self-supervised denoising for the Adaptive Particle Representation
Faculty of Computer Science, TU Dresden., 2020 (Bachelor thesis)
Systembiologie: Wird die Informatik auch die klinische Forschung revolutionieren?
Improvement of physics-informed neural networks for the Schrödinger equation
TU Dresden, Faculty of Computer Science, 2020 (Diploma thesis)
Rekonstruktion von Kleinwinkel Streudaten mit Neuronalen Netzwerken
TU Dresden, Faculty of Electrical and Computer Engineering, 2020 (Diploma thesis)
A minimal self-organisation model of the Golgi apparatus
Data-driven surrogate modelling for fast simulation of multi-object plane shadowgraphy
Technische Universität Dresden, Faculty of Computer Science, 2020 (Master thesis)
An Architecture for Interactive In Situ Visualization and its Transparent Implementation in OpenFPM
Conference talk, Workshop on In Situ Infrastructures for Enabling Extreme-scale Analysis and Visualization (ISAV), SC20: The International Conference on High Performance Computing, Networking, Storage, and Analysis, online, 12 November 2020
Computational Developmental Biology
Invited talk, Interdisciplinary Centre for Mathematical and Computational Modelling (ICM), University of Warsaw, Warsaw, Poland, 22 October 2020
Simulating morphogen Gradients in zebrafish epiboly
Conference talk, IbSB, Image-based Systems Biology Conference, online, 1 October 2020
A C++ expression system for scalable simulations of PDEs
Conference talk, DMV Conference, Deutsche Mathematiker-Vereinigung, Chemnitz, Germany, 14 September 2020
Bionic Tracking: Using Eye Tracking to Track Biological Cells in Virtual Reality
Conference talk, BioImageComputing (BIC) workshop at ECCV 2020, European Conference on Computer Vision, online, 23 August 2020
Learning Biological Dynamics from Microscopy Videos
Invited talk, ScaDS.AI Day, Center for Scalable Algorithms for Data Science and Artificial Intelligence, Dresden/Leipzig, Germany, 15 July 2020
Computer Science and Biology: A Synergy for the Future
Outreach, Public Lecture, Aula Leopoldina, University of Wroclaw, Wroclaw, Poland, 3 March 2020
New Computing Enables New Biology, which Inspires New Computing
Invited talk, Computer Science Seminar, Institute of Informatics, University of Wroclaw, Wroclaw, Poland, 3 March 2020
Multi-Architecture Parallel Particle Simulations on HPC Systems
Conference talk, SIAM Conference on Parallel Processing for Scientific Computing (SIAM-PP), Seattle (WA), USA, 12 February 2020
Quantifying the Robustness of Topological Defects in Orientation Fields from Bio-Images
Conference talk, Quantitative BioImaging Conference (QBI), Oxford, UK, 6 January 2020
2019
An inter-process communication protocol for optimized in situ visualization
MOSAIC technical report, MOSAIC Group, TU Dresden, 2019
Enabling the Adaptive Particle Representation on GPU: integrating a dynamic sparse data structure for the GPU in OpenFPM
Technische Universität München & Center for Systems Biology Dresden, 2019 (Master thesis)
Korrektur funktioneller Magnetresonanztomographiedaten (fMRT) mit Deep Learning Methoden
Faculty of Computer Science, TU Dresden., 2019 (Bachelor thesis)
scenery: Flexible Virtual Reality Visualization on the Java VM
A Proposed Framework for Interactive Virtual Reality In Situ Visualization of Parallel Numerical Simulations
OpenFPM: A scalable open framework for particle and particle-mesh codes on parallel computers
Efficient Preconditioning of DC PSE Operators based on Multivariate Newton Interpolation
APRnet: Convolutional neural networks for a content-adaptive particle representation of images
Chalmers University of Technology & Center for Systems Biology Dresden, 2019 (Master thesis)
A response surface method based on multivariate newton interpolation
Faculty of Computer Science, TU Dresden, 2019 (Semester thesis)
Minimal Model of Cellular Symmetry Breaking
Stochastic Design Centering: Coping with an uncertain oracle
TU Dresden, Faculty of Computer Science, 2019 (Diploma thesis)
Apeba: automatic robust parameter tuning for bioimage analysis
National Technical University of Athens (NTUA) & Center for Systems Biology Dresden, 2019 (Master thesis)
OMEGA: a software tool for the management, analysis, and dissemination of intracellular trafficking data that incorporates motion type classification and quality control
Big-Data Analytics transformiert die Lebenswissenschaften
Multivariate Lagrange Interpolation
Dynamic mode decomposition
MOSAIC technical report, MOSAIC Group, TU Dresden, 2019
Multivariate Newton & Lagrange Interpolation
Seminar, WU Vienna, Vienna, Austria, 13 December 2019
Particle Methods as a General Framework for Computation and Simulation
Invited talk, University of Grenoble, Laboratoire Jean Kuntzmann, Grenoble, France, 31 October 2019
The OpenFPM Framework for SPH and Particle-Mesh Simulation on Heterogeneous Parallel Computers
Conference talk, 7th International Conference on Particle-based Methods (PARTICLES2019), IACM + ECCOMAS, Barcelona, Spain, 28 October 2019
A Proposed Framework for Interactive Virtual Reality In Situ Visualization of Parallel Numerical Simulations
Poster, IEEE Symposium on Large Data Analysis and Visualization (IEEE-LDAV), Vancouver, Canada, 21 October 2019
scenery: Flexible Virtual Reality Visualization on the Java VM
Conference talk, IEEE Conference on Visualization (IEEE-VIS), Vancouver, Canada, 20 October 2019
A consistent mesh-free collocation scheme and its applications in systems biology
Invited talk, Dresden Numerics Symposium, TU Dresden, Dresden, Germany, 15 October 2019
Real-time 3D visualization and processing of large volumetric microscopy data
Invited talk, EMBO Symposium "Seeing is Believing - Imaging the Molecular Processes of Life", European Molecular Biology Laboratory (EMBL), Heidelberg, Germany, 10 October 2019
From sphere to tube and tube to network: The story of bile canaliculi growth in the liver lobule
Conference talk, Centuri Scientific meeting 2019 "Self-organization in multicellular systems", Cargese, France, 30 September 2019
Computational Approaches to Developmental Biology
Invited talk, Centre for Synthetic and Systems Biology, University of Edinburgh, Edinburgh, UK, 12 September 2019
Enabling data-driven discovery in biology: Statistical learning of interpretable mathematical models from microscopy videos
Invited talk, ScaDS Big Data summer school, Dresden, Germany, 30 August 2019
Tight Localisations of Feedback Sets in Cubic Time
Conference talk, 9th International Conference on Graph Theory, Bled, Slovenia, 23 June 2019
Topological Invariants of Elementary Cycles and a Generalization of Biggs Theorem
Conference talk, 9th International Conference on Graph Theory, Bled, Slovenia, 23 June 2019
The Algorithms of Life - Scientific Computing for Systems Biology
Keynote, ISC High-Performance (International Supercomputing Conference), Frankfurt/Main, Germany, 17 June 2019
OpenFPM for scalable particle-mesh codes on CPUs and GPUs
Poster, ISC High-Performance (International Conference on Supercomputing), Frankfurt/Main, Germany, 16 June 2019
Virtual Reality In-Situ Visualization with Interactive Steering for Numerical Simulations
Poster, ISC High-Performance (International Conference on Supercomputing), Frankfurt/Main, Germany, 16 June 2019
Informatik und Biologie - Eine Verbindung für die Zukunft (in German)
Keynote, Opening Public Keynote, Long Night of Science (Lange Nacht der Wissenschaften), Frankfurt/Main, Germany, 14 June 2019
Image-Based Modeling of Morphogenesis
Invited talk, 4th Central German Meeting on Bioinformatics, Dresden, Germany, 13 June 2019
Enabling data-driven discovery in biology by statistical learning of interpretable mathematical models from microscopy videos
Conference talk, New York Scientific Data Summit (NYSDS), Columbia University, New York City, USA, 12 June 2019
Enabling data-driven modeling in biology
Invited talk, Center for Computational Mathematics, Flatiron Institute, Simons Foundation, New York City, USA, 1 June 2019
Quantitative Analysis of Oriented Structures. From Noisy Image Data to Robust Topological Defects
Conference talk, IMG PhD Conference, Institute of Molecular Genetics of the Czech Academy of Sciences (IMG), Prague, Czech Republic, 24 May 2019
Scientific Computing for Systems Biology
Invited talk, Messtechnik-Seminar, TU Dresden, Dresden, Germany, 20 May 2019
DC-PSE Operators and the OpenFPM software framework
Invited talk, International Workshop on Particle Methods, ETH Zurich, Zurich, Switzerland, 16 May 2019
Multivariate Newton Interpolation
Seminar, ME Seminar, Stanford University, Stanford, USA, 11 April 2019
Multivariate Newton & Lagrange Interpolation
Invited talk, Center for Computational Mathematics, Flatiron Institute, Simons Foundation, New York City, USA, 4 April 2019
Numerical Simulations of Active Tissue Mechanics
Invited talk, Workshop on Image-Based Modeling and Simulation of Morphogenesis, Max Planck Institute for the Physics of Complex Systems, Dresden, Germany, 13 March 2019
OpenFPM for Scalable Particle Mesh-Simulations
Poster, International Workshop on Image-based Modeling and Simulation of Morphogenesis, Max Planck Institute for the Physics of Complex Systems, Dresden, Germany, 13 March 2019
Scenery SciView: Next-generation 3D visualization for ImageJ & Fiji
Poster, International Workshop on Image-based Modeling and Simulation of Morphogenesis, Max Planck Institute for the Physics of Complex Systems, Dresden, Germany, 13 March 2019
Taking Visualisation and Modelling to Virtual Reality with scenery & sciview
Conference talk, International Workshop on Image-based Modeling and Simulation of Morphogenesis, Max Planck Institute for the Physics of Complex Systems, Dresden, Germany, 13 March 2019
OpenFPM: An open and scalable framework for parallel particle and particle-mesh simulations
Invited talk, TU Munich, Munich, Germany, 26 February 2019
Coping with Big Image Data by Content-Adaptive Image Representation
Keynote, 3rd NEUBIAS Conference, Luxembourg, 7 February 2019
Spatial Analysis of Protein and Lipid Distributions on Spherical Beads
Poster, Quantitative BioImaging Conference (QBI), Rennes, France, 9 January 2019
2018
Adaptive particle representation of fluorescence microscopy images
Nat. Commun 9:5160, 2018
To the articleDownload PDFbioRxivSupplementary Material 1, 2To the repository
Modeling of the immune response during virus infection of the human respiratory tract
Lund University & Center for Systems Biology Dresden, 2018 (Master thesis)
Connections between discrete and continuous models for biological image analysis
BITS-F422T, Birla Institute of Technology and Science, 2018 (Master thesis)
Fast interpolation and Fourier transform in high-dimensional spaces
Intelligent Computing, Proc. 2018 IEEE Computing Conf., Vol. 2 857:53–75, 2018
Exact localisations of feedback sets
Multivariate Newton Interpolation
A domain-specific language and editor for parallel particle methods
Self-organized shape dynamics of active surfaces
Dynamics of Active Surfaces
An algorithm-centric Monte Carlo method to empirically quantify motion type estimation uncertainty in single-particle tracking
How Computational Models Enable Mechanistic Insights into Virus Infection
Spatiotemporal modeling of viral infection spread in the human respiratory tract
MOSAIC Group, TU Dresden, 2018 (Master thesis)
Multi-objective identification from fluorescence recovery after photobleaching experiments: Understanding morphogenetic regulation of epithelial polarity
Computer-based Liver Model
European Patent EP3582680A1; International Patent WO2018150045A1, 2018
Real-time immersive microscopy: Bringing back direct observation
Invited talk, University of Geneva, Geneva, Switzerland, 19 December 2018
Adaptive Particle Representation of Fluorescence Microscopy Images
Poster, I2K: From Images to Knowledge with ImageJ and Friends, EMBL, Heidelberg, Germany, 6 December 2018
Scenery SciView: Next-Generation 3D Visualization for ImageJ and Fiji
Poster, I2K: From Images to Knowledge with ImageJ and Friends, EMBL, Heidelberg, Germany, 6 December 2018
Computational Developmental Biology: Towards a Virtual Embryo
Invited talk, Blue Brain Project, EPFL, Geneva, Switzerland, 5 December 2018
Computational Tools for Image-Based Models of Morphogenesis
Invited talk, Mediterranean Institute for Life Sciences (MedILS), Split, Croatia, 7 November 2018
OpenFPM: A scalable open framework for particle and particle-mesh codes on parallel computers
Invited talk, Technical University of Denmark (DTU), Lyngby/Copenhagen, Denmark, 25 October 2018
Spatial interaction analysis in QuPath using MOSAICsuite
Poster, Annual Meeting of the Gesellschaft für Biologische Strahlenforschung e.V, Frankfurt/Main, Germany, 17 September 2018
3D Immersive Virtual-Reality microscopy using Scenery and SciView
Poster, 10th Lightsheet Conference, Dresden, Germany, 12 August 2018
openPMD - An Open Standard for Particle-Mesh Data Files
Conference talk, 18th Advanced Accelerator Concepts Workshop (AAC18), Breckenridge, Colorado, USA, 12 August 2018
Towards next generation imaging pipelines using the Adaptive Particle Representation
Conference talk, 10th Lightsheet Conference, Dresden, Germany, 12 August 2018
OpenFPM: a scalable framework for particle and mesh methods
Fast Interpolation and Fourier Transform in High-Dimensional Spaces
Adaptive Particle Representation: A novel framework for adaptive-resolution simulations
Poster, ACM Platform for Advanced Scientific Computing Conference (PASC18), Basel, Switzerland, 2 July 2018
OpenFPM for scalable particle-mesh simulations on distributed-memory computers
Poster, ACM Platform for Advanced Scientific Computing Conference (PASC18), Basel, Switzerland, 2 July 2018
Learning from the relative positioning of objects in images: co-localization and interaction analysis
Invited talk, Zurich Image and Data Science Symposium, Zurich, Switzerland, 22 June 2018
Spatial Statistics Extends Co-localiztion Analysis to Non-local Interaction Analysis
Conference talk, SIAM Conference on Imaging Science (SIAM-IS), Bologna, Italy, 5 June 2018
OpenFPM: An Open-source Framework for Highly Scalable Hybrid Particle-mesh Simulations
Conference talk, SIAM Conference on Parallel Processing for Scientific Computing (SIAM-PP), Tokyo, Japan, 7 March 2018
2017
An efficient randomized approximation algorithm for volume estimation and design centering
Lp-Adaptation: Simultaneous design centering and robustness estimation of electronic and biological systems
Engineered Control of Genetic Variability Reveals Interplay among Quorum Sensing, Feedback Regulation, and Biochemical Noise
ACS Synth. Biol 6(10):1903–1912, 2017
Multi-objective optimization for gene expression noise reduction in a synthetic gene circuit
IFAC-PapersOnLine 50(1):4472–4477, 2017
The Adaptive Particle Representation (APR) for Simple and Efficient Adaptive Resolution Processing, Storage and Simulations
Curvature filters efficiently reduce certain variational energies
A Quadratic-Time Algorithm for General Multivariate Polynomial Interpolation
Robust mapping of process networks to many-core systems using bio-inspired design centering
Proceedings of the 20th International Workshop on Software and Compilers for Embedded Systems (SCOPES ’17), 21–30, 2017
Diffusion constant under projection
A language and development environment for parallel particle methods
International Conference on Particle-based Methods – Fundamentals and Applications, 1–12, 2017
Prediction of subjective value decisions from brain activity data
TU Dresden, Faculty of Computer Science, 2017 (Diploma thesis)
A predictive 3D multi-scale model of biliary fluid dynamics in the liver lobule
pSSAlib: The partial-propensity stochastic chemical network simulator
Understanding tissues by watching them
Invited talk, Group of Professor Adriano Aguzzi, Institute of Neuropathology, University Hospital Zürich, Zurich, Switzerland, 22 December 2017
Advancing Scientific Computing to Unravel Tissue Development
Invited talk, Computational Science and Engineering Laboratory, ETH Zurich, Zurich, Switzerland, 8 November 2017
Image analysis and computer simulation to understand tissue development
Invited talk, Distinguished Speaker Series, Max Planck Institute for Informatics & Center for Bioinformatics, Saarland University, Saarbrücken, Germany, 25 October 2017
A Language and Development Environment for Parallel Particle Methods
Conference talk, 5th International Conference on Particle-based Methods (PARTICLES2017), IACM + ECCOMAS, Hanover, Germany, 26 September 2017
Smart Microscopy with ClearVolume, Scenery, and AutoPilot
Conference talk, 5th Swiss Microscopy Core Facility Day, Fribourg, Switzerland, 14 September 2017
Molecular mechanisms of membrane tethering and fusion: Reconstituting Rab5 Domains
Poster, EMBO Conference on Endocytic trafficking and signaling in health and disease, Serock, Poland, 10 September 2017
Computational Observation and Simulation of Developing Tissues in 3D
Invited talk, Department of Chemical Engineering, University of Patras, Patras, Greece, 25 July 2017
OpenFPM: A Software Framework for Parallel High-Performance Simulations using Particle Methods
Invited talk, Department of Chemical Engineering, University of Patras, Patras, Greece, 25 July 2017
Open Science with openPMD
Investigating embryogenesis using numerical simulations of biophysics
Invited talk, Soft Biophysics Group, CNRS and Univ. Paris-Sud, Orsay, France, 14 June 2017
Image Analysis and Computer Simulations to study the Physics of Morphogenesis
Invited talk, Institute Curie, Paris, France, 13 June 2017
Optimal reconstruction of sub-resolution structures in fluorescence microscopy images
Invited talk, International Workshop "Future Trends in DNA-based Nanotechnology", Dresden, Germany, 30 May 2017
Reconstituting Biophysics and Biochemistry in a Computer to Explain Embryogenesis
Invited talk, University of Geneva, Geneva, Switzerland, 18 May 2017
The future of bioimage informatics
Keynote, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany, 14 May 2017
The PPML language for distributed scalable processing enables real-time segmentation of large image data
Invited talk, Competence Center for Scalable Data Services and Solutions (ScaDS), Dresden/Leipzig, Germany, 11 May 2017
Image-Based Computational Biology: Toward a Virtual Embryo
Invited talk, EPFL Life Science Seminar, EPFL, Lausanne, Switzerland, 17 February 2017
What is Complexity?
Invited talk, Students of the Dresden International PhD Program, DIPP Vision Talk, Dresden, Germany, 14 February 2017
2016
A parallel distributed-memory particle method enables acquisition-rate segmentation of large fluorescence microscopy images
Parallel Distributed-Memory Particle Methods for Acquisition-Rate Segmentation and Uncertainty Quantification of Large Fluorescence Microscopy Images
Parameter identification in synthetic biological circuits using multi-objective optimization
IFAC-PapersOnLine 49(26):77–82, 2016
Optimization Alternatives for Robust Model-based Design of Synthetic Biological Circuits
IFAC-PapersOnLine 49(7):821–826, 2016
Using DC PSE operator discretization in Eulerian meshless collocation methods improves their robustness in complex geometries
A natural-scene gradient distribution prior and its application in light-microscopy image processing
IEEE Journal of Selected Topics in Signal Processing 10(1):99–114, 2016
Comparison between basic convolution and recursive method, and an alternative approach to recursive implementation on parallel architecture
MOSAIC technical report, MOSAIC Group, MPI-CBG, 2016
Dynamic load-balancing for massively parallel hybrid particle-mesh simulations
Politecnico di Torino, 2016 (Master thesis)
Extensions and improvements for the Parallel Particle Mesh Environment
TU Dresden, Faculty of Computer Science, 2016 (Diploma thesis)
Contractivity of a genetic circuit with internal feedback and cell-to-cell communication
IFAC-PapersOnLine 49(26):213–218, 2016
Minimal model for spontaneous cell polarization and edge activity in oscillating, rotating and migrating cells
Seeing Is Believing – Quantifying Is Convincing: Computational Image Analysis in Biology
Automatic optimal filament segmentation with sub-pixel accuracy using generalized linear models and B-spline level-sets
Overlap microtubules link sister k-fibres and balance the forces on bi-oriented kinetochores
Infectio: a generic framework for computational simulation of virus transmission between cells
Serialization and deserialization of complex data structures, and applications in high performance computing
MOSAIC Group, TU Dresden, 2016 (Master thesis)
Optimal segmentation models for fluorescence microscopy images
Invited talk, Biomedical Image Analysis Seminar Series, University of Basel, Basel, Switzerland, 29 November 2016
Model-Based Image Analysis Improves Segmentation of Fluorescence Microscopy Images
Keynote, EU-Life Course Biological Image Reconstruction and Analysis, MDC, Berlin, Germany, 15 November 2016
How statistics can help improve microscopy image analysis
Invited talk, Microscopy for Biology School (MiFoBio), Biarritz, France, 5 October 2016
Computational Modeling of Human Adenovirus Egress
Poster, European Conference on Computational Biology (ECCB), The Hague, The Netherlands, 3 September 2016
Microscopy image analysis - teaching computers to see
Invited talk, Mediterranean Institute for Life Sciences (MedILS), Split, Croatia, 3 August 2016
The Physics of Virus Entry through the Computational Lens
Keynote, Interdisciplinary Symposium on the Biophysics of Pathogens, University College London (UCL), London, UK, 24 June 2016
Meshless collocation and Lagrangian particle methods for nonlinear PDEs on complex and deforming domains
Invited talk, Computational Science Priority Programme, University of Luxembourg, Luxembourg, 16 June 2016
A Hybrid Particle-Mesh Method for Active Polar Gels
Conference talk, SIAM Conference on Mathematical Aspects of Materials Science, Workshop on Active Matter, Philadelphia, PA, USA, 8 May 2016
Mechano-Chemical Pattern Formation on Surfaces
Conference talk, SIAM Conference on Mathematical Aspects of Materials Science, Workshop on Active Matter, Philadelphia, PA, USA, 8 May 2016
ClearVolume - microscope to visualization in seconds
Poster, Visualization in Biology (VizBi), Heidelberg, Germany, 9 March 2016
Stochasticity in DNA Replication of Archaea
Conference talk, Spring Meeting of the German Physical Society (DPG), Regensburg, Germany, 6 March 2016
2015
Spectrally Regularized Surfaces
A self-organizing adaptive-resolution particle method with anisotropic kernels
Towards a Next-Generation Parallel Particle-Mesh Language
Proc. Workshop DSLDI, 29th European Conference on Object-Oriented Programming (ECOOP), 2015 (paper acceptance rate: 31/136)
Classification of sleep stages using functional magnetic resonance imaging (fMRI) and sparse classifiers
MOSAIC Group, Faculty of Computer Science, TU Dresden, 2015 (Semester thesis)
Comparative Analysis of Synthetic Optimization Strategies Employed in Classification of BBOB Dataset with Speculated Natural Analogies of BBOB Functions and their Corresponding Phenomenological Algorithms
MOSAIC technical report, MOSAIC Group, MPI-CBG, 2015
Dicriminative Learning for Particle Filters in Micro-Biological Applications
Dresden University of Technology, Computer vision lab Dresden & MOSAIC Group, 2015 (Master thesis)
A hybrid particle-mesh method for incompressible active polar viscous gels
ClearVolume: open-source live 3D visualization for light-sheet microscopy
Finding faces in a planar embedding of a graph
Segmentation of zebrafish vasculature
3D epithelial segmentation
Model-based Image Analysis for Fluorescence Microscopy
Keynote, BioImage Informatics Conference, National Institute of Standards and Technology (NIST), Gaitherburg, MD, USA, 15 October 2015
Scientific Computing in Systems Biology - Unraveling the Algorithms of Life
Invited talk, Inaugural Lecture, Faculty of Computer Science, TU Dresden, Dresden, Germany, 22 July 2015
Towards a Next-Generation Parallel Particle- Mesh Language
Conference talk, 29th European Conference on Object-Oriented Programming (ECOOP), Workshop DSLDI (paper acceptance rate: 31/136), Prague, Czech Republic, 5 July 2015
Model-Based Image Analysis: Towards Versatile and Robust Microscopy Image Qualification
Keynote, 30th Congress of the International Society for the Advancement of Cytometry (CYTO2015), Glasgow, Scotland, UK, 29 June 2015
OMEGA: an open source environment to facilitate the execution of motion analysis workflows, to estimate error and to share results
Poster, 10th Annual OME Users Meeting, Institut Pasteur, Paris, France, 2 June 2015
ClearVolume - Light sheet microscopy deserves to be experienced live and in 3D
Poster, Focus on Microscopy, Göttingen, Germany, 29 March 2015
Globally optimal image segmentation over continuous Bayesian models
Invited talk, Quantitative BioImaging Conference (QBI), Institute Pasteur, Paris, France, 8 January 2015
The MOSAICsuite for Fiji and ImageJ
Poster, Quantitative BioImaging Conference (QBI), Institute Pasteur, Paris, France, 7 January 2015
Bioimaging requires novel computer vision approaches and open software
Keynote, European BioImage Analysis Symposium (EuBIAS) 2015, Institute Curie, Paris, France, 6 January 2015
2014
Towards an FCA-based recommender system for black-box optimization
Proc. 3rd Intl. Workshop "What can FCA do for Artificial Intelligence?", co-located with the European Conference on Artificial Intelligence (ECAI 2014), 35–42, 2014
A pthreads wrapper for Fortran 2003
Setting Young’s modulus in the subcellular element model
Dresden University of Technology, MOSAIC Group, 2014 (Diploma thesis)
Objective comparison of particle tracking methods
Nature Methods 11(3):281–289, 2014
Download PDFCover PDFSupplementary MaterialTo the repositoryEditorialNews & Views Article
Piecewise constant sequential importance sampling for fast particle filtering
PPF – A parallel particle filtering library
An adaptive distributed resampling algorithm with non-proportional allocation
Proc. ICASSP, IEEE Intl. Conf. Acoustics, Speech, and Signal Processing, 1635–1639, 2014
Dynamic Load Balancing in Parallel Particle Methods
Distributed dynamic load balancing in massively parallel scientific numerical simulations
Contact angle at the leading edge controls cell protrusion rate
Surface Analysis of Realistic 3D Bile Canalicular Lumen
Image enhancement by gradient distribution specification. In C. V. Jawahar and S. Shan, editors, Computer Vision – ACCV 2014 Workshops, Revised Selected Papers, Part II, volume 9009 of
Lect. Notes Comput. Sci, 47–62, 2014 (Singapore)
Download PDFSupplementary MaterialTalk Slides PDFTo the repository 1, 2
Calculation of the electric potential for a neuronal activity model in the brain
MOSAIC Group, TU Dresden, 2014 (Diploma thesis)
Segmentation and quantification of subcellular structures in fluorescence microscopy images using Squassh
Particle methods enable fast and simple approximation of Sobolev gradients in image segmentation
A method for modeling growth of organs and transplants based on the general growth law: application to the liver in dogs and humans
Globally optimal geometric segmentation of filaments
What can computing do for biology?
Invited talk, Institute of Computational Biology, Helmholtz Center Munich, Munich, Germany, 16 December 2014
Das Ende der Wissensgesellschaft? (in German)
Invited talk, Official address, Graduation awards ceremony for the best graduates of all faculties, TU Dresden, Dresden, Germany, 12 December 2014
Developments in Scientific Computing for Image-based Systems Biology
Invited talk, Max Delbruck Center for Molecular Medicine (MDC), Berlin, Germany, 24 November 2014
Image Enhancement by Gradient Distribution Specification
Towards parameter-free and optimal processing of microscopy images
Invited talk, University College London (UCL), London, UK, 29 October 2014
A parallel distributed-memory particle method enables segmenting very large images
Poster, Bio-Image Informatics Conference, Leuven, Belgium, 8 October 2014
A Parallel Particle Filtering Framework for Multi-Object Tracking in Bioimaging
Poster, Bio-Image Informatics Conference, Leuven, Belgium, 8 October 2014
Dive into data: Immersive visualization of 3D particle image representations
Poster, Bio-Image Informatics Conference, Leuven, Belgium, 8 October 2014
Forget pixels: adaptive particle representation for efficient storage and processing of fluorescence microscopy images
Conference talk, Bio-Image Informatics Conference, Leuven, Belgium, 8 October 2014
Making Microscopy Images more Natural
Poster, Bio-Image Informatics Conference, Leuven, Belgium, 8 October 2014
Optimal Sub-pixel Filament Segmentation using a B-Spline Vector Level-Set
Poster, Bio-Image Informatics Conference, Leuven, Belgium, 8 October 2014
The MOSAICsuite for Fiji and ImageJ
Poster, Bio-Image Informatics Conference, Leuven, Belgium, 8 October 2014
Towards a fully automated representation of epithelial tissues as 3D graphs
Poster, Bio-Image Informatics Conference, Leuven, Belgium, 8 October 2014
From Prototypes to Workhorses: Computational Methods Help Dissect Viral Dynamics
Invited talk, Conference on Early Events in Virus Infection, Monte Verita, Ascona, Switzerland, 26 August 2014
Towards an FCA-based Recommender System for Black-Box Optimization
Conference talk, European Conference on Artificial Intelligence (ECAI), Prague, Czech Republic, 18 August 2014
Bio-image analysis can be both user-friendly and optimal
Invited talk, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany, 14 May 2014
An Adaptive Distributed Resampling Algorithm with Non-Proportional Allocation
Conference talk, IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP), Florence, Italy, 4 May 2014
Piecewise Constant Sequential Importance Sampling for Fast Particle Filtering
PPF – A Parallel Particle Filtering Library
Globally Optimal Geometric Segmentation of Filaments
Poster, IEEE International Symposium on Biomedical Imaging (ISBI), Beijing, China, 29 April 2014
Bio-inspired algorithms for black-box optimization
Invited talk, Center for Advancing Electronics Dresden (cfAED), Dresden, Germany, 14 April 2014
Uniting image reconstruction and segmentation for fluorescence microscopy
Invited talk, International Meeting of the German Society for Cell Biology, Regensburg, Germany, 18 March 2014
Model-based bio-image analysis using Bayesian segmentation
Invited talk, Computational Biology Institute Seminar, Helmholtz Center Munich, Munich, Germany, 10 February 2014
Efficient exact simulation algorithms for (bio-)chemical reaction networks
Invited talk, Biological Physics Retreat of the Max Planck Institute for Physics of Complex Systems, Spindleruv Mlyn, Czech Republic, 30 January 2014
2013
A Domain-Specific Language and Scalable Middleware for Particle-Mesh Simulations on Heterogeneous Parallel Computers
A domain-specific programming language for particle simulations on distributed-memory parallel computers
A portable OpenCL implementation of generic particle-mesh and mesh-particle interpolation 2D and 3D
Unsupervised Segmentation and Shape Posterior Estimation under Bayesian Image Models
Balanced offline allocation of weighted balls into bins
Balancing indivisible real-valued loads in arbitrary networks
A meshless particle method for Poisson and diffusion problems with discontinuous coefficients and inhomogeneous boundary conditions
Numerical simulations of bile flow in realistic image-derived bile canalicular geometries
Dresden University of Technology, MOSAIC Group, 2013 (Master thesis)
Local weighted Gaussian curvature for image processing
Coupling image restoration and segmentation: A generalized linear model/Bregman perspective
Piecewise smooth deconvolving segmentation
Dresden University of Technology, MOSAIC Group, 2013 (Diploma thesis)
Modeling and simulation of biological systems from image data
Trafficking computes
MosaicIA: an ImageJ/Fiji plugin for spatial pattern and interaction analysis
Receptor concentration and diffusivity control multivalent binding of SV40 to membrane bilayers
Model-based bio-image analysis: teaching computers how to look at microscopy images
Invited talk, Zurich Life Science Seminar, Institute of Molecular Life Sciences, University of Zurich, Zurich, Switzerland, 26 November 2013
Computational Biology: Experiments in Cyber Space
Invited talk, DIPP Vision Talk, Dresden International PhD Program, Dresden, Germany, 8 October 2013
A Domain-Specific Programming Language for Particle Simulations on Distributed-Memory Parallel Computers
Conference talk, 3rd International Conference on Particle-Based Methods: Fundamentals and Applications, Stuttgart, Germany, 18 September 2013
Local Weighted Gaussian Curvature for Image Processing
Conference talk, IEEE International Conference on Image Processing (ICIP), Melbourne, Australia, 15 September 2013
A meshless particle method for simulating continuum reaction-diffusion on deforming surfaces
Invited talk, Technical University of Dortmund, Faculty of Mathematics, Dortmund, Germany, 10 September 2013
3D Computer Reconstruction of the Developing Zebrafish Vasculature
Poster, 14th International Conference on Systems Biology (ICSB), Copenhagen, Denmark, 30 August 2013
Teaching Computers to Look at Biological Images
Invited talk, S3 Summer School of Science, Pozega, Croatia, 3 August 2013
3D Computer Reconstruction of the Developing Zebrafish Vasculature
Poster, 21st Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and 12th European Conference on Computational Biology (ECCB), Berlin, Germany, 21 July 2013
Reconstructing high-resolution images from multiple low-resolution views
Poster, 21st Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and 12th European Conference on Computational Biology (ECCB), Berlin, Germany, 21 July 2013
Introduction to Stochastic Chemical Kinetics; Stochastic Effects in Mesoscopic Reaction Networks; Exact Simulation Algorithms for Stochastic Chemical Kinetics (three lectures)
Invited talk, Summer School on Information Processing in Biological Systems, Faculty of Physics, University of Buenos Aires, Buenos Aires, Argentina, 16 July 2013
Consistent approximation of linear differential operators on irregularly distributed colocation points
Invited talk, Dresden Mathematical Seminar (Dresdner Mathematisches Seminar), Faculty of Mathematics, TU Dresden, Dresden, Germany, 29 May 2013
Model-based image segmentation in fluorescence microscopy
Invited talk, European Molecular Biology Laboratory (EMBL), Course on Bioimage Data Analysis, Heidelberg, Germany, 15 May 2013
Contact angle at the leading edge controls cell protrusion rate
Poster, All SystemsX Day 2013, Bern, Switzerland, 13 May 2013
Computational Biology with Particle Methods
Seminar, Carnegie Mellon University, Lane Center for Computational Biology, Pittsburgh, PA, USA, 2 May 2013
Bio-inspired computing and optimization problem classification
Invited talk, Center for Advanced Electronics Dresden (cfAED), TU Dresden, Dresden, Germany, 27 February 2013
Cell shape transformation: from observation to analysis
Conference talk, National Competence Center on Biomedical Imaging, Annual Meeting, Paul-Scherrer Institute, Villigen, Switzerland, 8 February 2013
The Parallel Particle Mesh (PPM) library and a domain-specific language for particle methods
Invited talk, Center for High-Performance Computing, TU Dresden, Dresden, Germany, 7 February 2013
Particle Methods for Computational Systems Biology
Invited talk, Max Planck Institute for the Physics of Complex Systems, Dresden, Germany, 4 February 2013
2012
High-resolution cell outline segmentation and tracking from phase-contrast microscopy images
Fast neighbor lists for adaptive-resolution particle simulations
PPM: A scalable software framework for parallel particle-mesh simulations
PPM WebCG: A visual programming environment for PPM
MOSAIC Group, ETH Zürich, 2012 (Bachelor thesis)
Discrete region competition for unknown numbers of connected regions
Solving the EEG forward problem with a meshless particle method
Coupled signed-distance functions for implicit surface reconstruction
Simulation of the insulin pathway
MOSAIC Group, ETH Zürich, 2012 (Master thesis)
Image-based Application of Spatial Statistics to Patterning of Proliferation in Wing Disc Development
MOSAIC Group, ETH Zürich, 2012 (Master thesis)
Image segmentation through localized energy vector fields
Implementation and Performance Comparison of an Ensemble Sampler with Affine Invariance
Global parameter identification of stochastic reaction networks from single trajectories
Variable-metric randomized black-box optimization over the cone of positive definite matrices
Energy landscapes of atomic clusters as black-box optimization benchmarks
Discreteness-induced concentration inversion in mesoscopic chemical systems
A self-organizing Lagrangian particle method for adaptive-resolution advection–diffusion simulations
Anisotropic kernels for self-organizing Lagrangian particles
Image-based systems biology: Modeling and simulation in image-derived geometries
Workshop on Image-based Systems Biology, German Conference on Bioinformatics (GCB), 2012
Active flows cluster cell surface proteins
Choosing the best kernel: performance models for diffusion operators in particle methods
Fast region competition in ImageJ
MOSAIC Group, ETH Zürich, 2012 (Bachelor thesis)
On spectral invariance of Randomized Hessian and Covariance Matrix Adaptation Schemes
Convergence of local search
Extending pSSAlib to spatiotemporal reaction-diffusion simulations
Cell-free transmission of human adenovirus by passive mass transfer in cell culture simulated in a computer model
Particle Methods for Computational Systems Biology
Invited talk, Technical University of Dresden, Faculty of Computer Science, Dresden, Germany, 20 December 2012
How Protrusion/retraction switch controls cell shape and motion
Poster, Annual Meeting of the American Society for Cell Biology (ACSB), San Francisco, California, 15 December 2012
Interplay between cytoskeletal forces, membrane tension and hydrostatic pressure in rapidly migrating cells
Poster, Annual Meeting of the American Society for Cell Biology (ACSB), San Francisco, California, 15 December 2012
Image-based Systems Biology: Modeling and Simulation in Image-derived Geometries
Invited talk, Biotec Forum Dresden, Dresden, Germany, 7 December 2012
From stochastic optimization to more efficient simulation algorithms
Invited talk, Institute for probability theory, Faculty of Mathematics, Technical University of Dresden, Dresden, Germany, 8 November 2012
Particle methods for image-processing and simulation, and the Parallel Particle Mesh (PPM) Library
Invited talk, Helmholtz Center Rossendorf, Rossendorf, Germany, 7 November 2012
Randomized black-box optimization: Concepts, Theory, and practical algorithms
Partial-propensity simulation algorithms for stochastic chemical kinetics and the role of fluctuations in mesoscopic chemical reaction systems
Seminar, Helmholtz Center Munich, Computational Modeling in Biology, Munich, Germany, 24 October 2012
Anisotropic kernels for self-organizing Lagrangian particles
Conference talk, IUTAM Symposium on Particle Methods in Fluid Mechanics, Copenhagen, Denmark, 15 October 2012
Deconvolving Image Segmentation
Invited talk, University of Houston, Department of Electrical Engineering, Houston, USA, 8 October 2012
Image-based Systems Biology: Modeling and Simulation in Image-derived Geometries
Invited talk, Workshop on Image-based Systems Biology, Jena, Germany, 19 September 2012
A computational multi-scale hybrid framework for modeling virus transmission
Poster, BioImage Informatics Conference 2012, Dresden, Germany, 16 September 2012
Flexible multi-region bio-image segmentation including prior knowledge
Conference talk, BioImage Informatics Conference 2012, Dresden, Germany, 16 September 2012
A computational multi-scale hybrid framework for modeling virus transmission
Poster, European Conference on Computational Biology (ECCB), Basel, Switzerland, 9 September 2012
Parallel adaptive-resolution simulations using particles
Seminar, Computational Science and Engineering, TU Munich, Munich, Germany, 16 July 2012
Image-based Systems Biology of Mammalian Cells: Watching Closely
Keynote, 2012 Conference on Systems Biology of Mammalian Cells (SBMC), Leipzig, Germany, 10 July 2012
PPM: A scalable software framework for parallel particle-mesh simulations
Conference talk, PDEsoft: 1st Intl. Workshop on PDE Software Frameworks, Münster, Germany, 18 June 2012
My Life and My Science
Invited talk, 2012 Insel Symposium "The Roots of Future Biology", Konstanz, Germany, 14 June 2012
Multi-scale hybrid dynamics modeling and passive mass transfer reveal cell-free virus transmission
Poster, 10th International Adenovirus Meeting, Umeå, Sweden, 13 June 2012
Coupled signed-distance functions for implicit surface reconstruction
Conference talk, IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, Spain, 2 May 2012
Fast Particle Tracking for Prior-free Motion
Conference talk, IEEE International Symposium on Biomedical Imaging (ISBI), Barcelona, Spain, 2 May 2012
Variable-metric randomized black-box optimization over the cone of positive definite matrices
Conference talk, 6th Workshop on Theory of Randomized Search Heuristics (ThRaSH'2012), Lille, France, 2 May 2012
Numerical simulations in image-derived geometries using meshless particle methods
Invited talk, Mathematics Department of the University of Münster, Münster, Germany, 11 April 2012
Imaging and simulation of intracellular membrane dynamics
Invited talk, 105th International Titisee Conference, Titisee, Germany, 29 March 2012
Interplay Between Cytoskeletal Forces, Membrane Tension and Hydrostatic Pressure in Rapidly Migrating Cells
Conference talk, 56th annual meeting of the Biophysical Society, San Diego, California, USA, 25 February 2012
Deconvolving active contours for high-resolution reconstruction of intra-cellular objects from fluorescence microscopy images
Seminar, Paul Scherrer Institute (PSI), Villigen, Switzerland, 20 February 2012
Landscapes in Optimization, Physics, and Biology
Seminar, Center for Studies in Physics and Biology, The Rockefeller University, New York, USA, 14 February 2012
Cell shape transformation: from observation to analysis
Conference talk, Swiss Soft Days 7, Lausanne, Switzerland, 13 February 2012
Coupled signed-distance functions for implicit surface reconstruction
Poster, Swiss Institute of Bioinformatics Annual Meeting (SIB Days), Biel/Bienne, Switzerland, 30 January 2012
Parameter estimation and approximate Bayesian computation in deterministic and stochastic biological networks
Seeing is believing - quantifying is convincing: Advances in image processing for modern biological images
Conference talk, Swiss Institute of Bioinformatics Annual Meeting (SIB Days), Biel/Bienne, Switzerland, 30 January 2012
Super-resolution imaging and image analysis of protein-protein interactions in membranes
Poster, Swiss Institute of Bioinformatics Annual Meeting (SIB Days), Biel/Bienne, Switzerland, 30 January 2012
Accurate cell outline segmentation and tracking from phase-contrast microscopy images and applications for investigating the mechanism of cell motility
Poster, Biophysics LEB meeting, Monte Verita, Switzerland, 15 January 2012
2011
Parameter selection using evolutionary strategies in ImageJ
MOSAIC Group, ETH Zürich, 2011 (Bachelor thesis)
Solving the inverse problem in EEG source localization using SVM
MOSAIC Group, ETH Zürich, 2011 (Bachelor thesis)
Dynamic measurement of the height and volume of migrating cells by a novel fluorescence microscopy technique
Particle-mesh interpolations on GPGPU
Technische Universität München & MOSAIC Group, ETH Zurich, 2011 (Master thesis)
A parallel particle method for solving the EEG source localization forward problem
Energy-based image segmentation using GPGPU
Technische Universität München & MOSAIC Group, ETH Zurich, 2011 (Master thesis)
Eigenvalue spectra of various operators using the PSE-DC formulation
Molecular Dynamics simulations of lipid bilayers
A parallel anisotropic adaptive-resolution particle method for advection-diffusion simulations
MOSAIC Group, ETH Zurich, 2011 (Master thesis)
Checkpoint/restart of massively parallel simulations
MOSAIC Group, ETH Zürich, 2011 (Semester thesis)
Exact stochastic simulations of intra-cellular transport by mechanically coupled molecular motors
A multi-resolution particle method with semi-implicit discretisation for membrane dynamics simulations
MOSAIC Group, ETH Zürich, 2011 (Master thesis)
Continuous black-box optimization in linearly constrained domains using efficient Gibbs sampling
Proc. EVOLVE, Workshop on Probability, Set Oriented Numerics and Evolutionary Computation, 2011
A conjecture about an upper bound of the RMSD between linear chains
Global characterization of the CEC 2005 fitness landscapes using fitness-distance analysis
Finding maximizing Euclidean TSP tours for the Hame-Hyytia-Hakula conjecture
Gaussian Adaptation for robust design centering
Evolutionary and deterministic methods for design, optimization and control, Proc. EuroGen, 736–742, 2011
Sensitivity analysis from evolutionary algorithm search paths
Proc. EVOLVE, Workshop on Probability, Set Oriented Numerics and Evolutionary Computation, 2011
An alternating split Bregman algorithm for multi-region segmentation
Efficient Implementation of a Gibbs Sampler for Multivariate Truncated Gaussian and of the Gaussian Adaptation Algorithm
Estimating the Hurst exponent
MOSAIC Group, ETH Zürich, 2011 (Bachelor thesis)
A partial-propensity formulation of the stochastic simulation algorithm for chemical reaction networks with delays
Intrinsic noise alters the frequency spectrum of mesoscopic oscillatory chemical reaction systems
Noise-induced modulation of the relaxation kinetics around a non-equilibrium steady state of non-linear chemical reaction networks
Exact on-lattice stochastic reaction-diffusion simulations using partial-propensity methods
Partial-propensity simulation algorithms for stochastic chemical kinetics and the role of fluctuations in mesoscopic reaction systems
Discretization-Corrected PSE Operators for Adaptive Multiresolution Particle Methods
An adaptive level-set method for reaction-diffusion systems on moving surfaces
MOSAIC Group, ETH Zürich, 2011 (Master thesis)
Proteome sequence features carry signatures of the environmental niche of prokaryotes
Histone deacetylase 8 is required for centrosome cohesion and influenza A virus entry
Unifying zeroth- and first-order variable metric algorithms for continuous non-convex optimization
MOSAIC Group, ETH Zürich, 2011 (Master thesis)
The Lovasz-Vempala algorithm for computing the volume of a convex body in O*(n^4) - Theory and Implementation
Invited talk, Mittagsseminar, Institute of Theoretical Computer Science, ETH Zurich, Zurich, Switzerland, 20 December 2011
Correlation between membrane tension, 3D shape and cell migration
Conference talk, 3rd Cell Shape Changes Course, Paris, France, 13 December 2011
Seeing is believing - quantifying is convincing: Modern image quantification in fluorescence microscopy
Invited talk, CIMST Microscopy & Nanoscopy Seminar, Zurich Center for Imaging Science and Technology (CIMST), Zurich, Switzerland, 8 December 2011
Variable-metric randomized gradient-free optimization over continuous real-valued domains and the cone of positive semi-definite matrices
Invited talk, Theoretical Computer Science, Department of Math and CS, Friedrich-Schiller University, Jena, Germany, 7 December 2011
Correlation between membrane tension, three-dimensional shape and cell migration
Poster, American Society for Cell Biology (ASCB) Meeting, Denver, USA, 3 December 2011
Particle methods provide a unifying framework for biomedical image processing and simulation
Seminar, Institut für Medizinische Informatik und Biometrie (IMB), Medical faculty, Technical University of Dresden, Dresden, Germany, 1 December 2011
Variable-metric randomized methods for gradient-free optimization
Invited talk, Vision Lab, Department of Electrical Engineering, California Institute of Technology (Caltech), Pasadena, USA, 23 November 2011
Flexible and Efficient Multi-Region Segmentation Using Active Contours
Invited talk, IEEE Asilomar Conference on Signals, Systems, and Computers, Pacific Grove, CA, USA, 7 November 2011
Adenoviral Infection Spread in Two-Dimensional Cell Arrays Characterized by Hybrid Spatial Dynamics Modeling
Poster, 1st International SystemsX.ch Conference on Systems Biology, Basel, Switzerland, 24 October 2011
Correlation between membrane tension, three-dimensional shape and cell migration velocity
Poster, 1st International SystemsX.ch Conference on Systems Biology, Basel, Switzerland, 24 October 2011
Gaussian Adaptation for gradient-free optimization and Markov Chain Monte Carlo sampling
Invited talk, Institute of Computational Science (Group M. Parrinello), University of Lugano, Lugano, Switzerland, 24 October 2011
Image-based Systems Biology: Modeling and Simulation in Image-derived Geometries
Seminar, Institute for Automatic Control, ETH Zurich, Zurich, Switzerland, 18 October 2011
Dynamic measurement of the height and volume of migrating cells by a novel fluorescence microscopy technique
Poster, 4th European Cell Mechanics Meeting (CellMech 2011), Amsterdam, The Netherlands, 17 October 2011
Seeing is believing ‑ quantifying is convincing
Keynote, Imaris User Group Meeting, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany, 12 October 2011
Coupling Image Restoration and Segmentation: A Generalized Linear Model Approach
Seminar, Institute for Automatic Control, ETH Zurich, Zurich, Switzerland, 4 October 2011
Cellular dynamics simulations from live imaging
Seminar, Center for Systems Biology, University of Edinburgh, Edinburgh, UK, 29 September 2011
Coupling Image Restoration and Segmentation: A Generalized Linear Model Approach
Invited talk, Technical University of Dresden, Computer Science Department, Dresden, Germany, 23 September 2011
Stochastic adaptive methods for black-box optimization and sampling algorithms with application to parameter identification in biological networks
Invited talk, Algorithms Biology Structure Group, INRIA Sophia-Antipolis, Sophia Antipolis, France, 20 September 2011
Coupling Image Restoration and Segmentation: A Generalized Linear Model Approach
Invited talk, BioImage Informatics Conference, Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn (VA), USA, 19 September 2011
Gaussian Adaptation for Robust Design Centering
Invited talk, International Conference on Evolutionary and Deterministic Methods for Design, Optimization and Control (EuroGen2011), Capua, Italy, 15 September 2011
From images to 3D simulations of cellular dynamics using particles
Invited talk, International Conference for Systems Biology (ICSB), Session on Image-based Models of Cell Organization and Function, Mannheim, Germany, 31 August 2011
Continuous gradient-free optimization over convex domains based on Gibbs sampling
Conference talk, International Conference on Operations Research (OR'11), Zurich, Switzerland, 30 August 2011
Adenoviral Infection Spread in Two-Dimensional Cell Arrays Characterized by Hybrid Spatial Dynamics Modeling
Poster, Swiss Fundamental Virology workshop, Thun, Switzerland, 29 August 2011
Cell shape transformation: from observation to analysis
Poster, National Competence Center on Biomedical Imaging, Annual Meeting, ETH Zurich, Zurich, Switzerland, 29 August 2011
Cell shape transformations: from observations to analysis
Conference talk, NCCBI meeting of the National Competence Center for Biomedical Imaging, Zurich, Switzerland, 29 August 2011
Super-resolution imaging and image analysis of protein-protein interactions in membranes
Poster, NCCBI meeting of the National Competence Center for Biomedical Imaging, Zurich, Switzerland, 29 August 2011
Adaptive stochastic methods for black-box optimization and sampling with application to parameter identification in biological networks
Invited talk, Computational Biology Group, University of Lausanne, Lausanne, Switzerland, 24 August 2011
Theory, Algorithms, and Software for Particle Methods
Invited talk, Indian Institute of Technology Madras (IITM), Department of Computer Science, and the Indian National Institute of Mathematics, Chennai (Madras), India, 26 July 2011
Particle Methods for Image-based Systems Biology
Invited talk, Waran Research Foundation (WARFT), Chennai (Madras), India, 25 July 2011
Random derivative-free optimization of convex functions using a line search oracle
Conference talk, 5th Workshop on Theory of Randomized Search Heuristics (ThRaSH'2011), Copenhagen, Denmark, 8 July 2011
Self-Organizing Lagrangian Particles for Spatially Adaptive Simulations on Parallel Computers
Invited talk, Computational Science group, University of Amsterdam, Amsterdam, The Netherlands, 24 June 2011
Adenoviral Infection Spread in Two-Dimensional Cell Arrays Characterized by Hybrid Spatial Dynamics Modeling
Poster, Basel Computational Biology Conference (BC2), Basel, Switzerland, 23 June 2011
Image-based Systems Biology
Invited talk, Max F. Perutz Laboratories, Computational and Structural Biology, Vienna, Austria, 16 June 2011
Evolution Strategies in linearly constrained domains using efficient Gibbs sampling
Invited talk, TAO group, INRIA Saclay, Paris, France, 14 June 2011
Variable-metric randomized search heuristics for gradient-free black-box optimization
Invited talk, workshop on Computational Geometric Learning, Institut Henri Poincare, Paris, France, 11 June 2011
Continuous black-box optimization in linearly constrained domains using efficient Gibbs sampling
Conference talk, EVOLVE, workshop on Probability, Set Oriented Numerics, and Evolutionary Computation, Bourglinster Castle, Luxembourg, 25 May 2011
Sensitivity analysis from evolutionary algorithm search paths
Conference talk, EVOLVE, workshop on Probability, Set Oriented Numerics, and Evolutionary Computation, Bourglinster Castle, Luxembourg, 25 May 2011
A parallel particle method for solving the EEG source localization forward problem
Conference talk, 6th International Symposium on Health Informatics and Bioinformatics, (HIBIT 2011), Izmir, Turkey, 3 May 2011
Global characterization of the CEC 2005 fitness landscapes using fitness-distance analysis
Conference talk, EvoStar Joint European Conference on Evolutionary Computation, Torino, Italy, 27 April 2011
From stochastic optimization to more efficient simulation algorithms
A conjecture about an upper bound of the RMSD between linear chains
Conference talk, 27th European Workshop on Computational Geometry (EuroCG), Morschach, Switzerland, 28 March 2011
Parallel Computing using Particles: Algorithms, Software, and Applications
Invited talk, University of Lugano, Lugano, Switzerland, 21 March 2011
Large-scale multi-resolution simulations on parallel computers using particles
Invited talk, Stony Brook University, Stony Brook, NY, USA, 11 March 2011
Accurate cell outline segmentation and tracking from phase-contrast microscopy images and applications for investigating the mechanism of cell motility
Poster, 55th annual meeting of the Biophysical Society, Baltimore, Maryland, USA, 5 March 2011
Cell edge dynamics during polarization
Conference talk, 55th annual meeting of the Biophysical Society, Baltimore, Maryland, USA, 5 March 2011
Dynamics of Wound Repair in the Lamellipodia
Conference talk, 55th annual meeting of the Biophysical Society, Baltimore, Maryland, USA, 5 March 2011
Computational reconstruction of intracellular and cellular membranes from fluorescence microscopy images
Invited talk, University of Münster, Münster, Germany, 3 March 2011
Image-based Systems Biology: Modeling and Simulation in Image-derived Geometries
Invited talk, Symposium on Systems Biology of Cells and Tissues, Max Planck Institute of Molecular Cell Biology and Genetics and Max Planck Institute for the Physics of Complex Systems, Dresden, Germany, 28 February 2011
From stochastic optimization to more efficient simulation algorithms
Seminar, Center for Control, Dynamical Systems and Computation (CCDC), University of California at Santa Barbara, Santa Barbara, CA, USA, 18 February 2011
Black-box Landscapes: Characterization, Optimization, Sampling, and Applications
Invited talk, Department of Chemistry (Rabitz group), Princeton University, Princeton, USA, 17 February 2011
Particle methods for bio-image processing and simulations
Invited talk, California Institute for Quantitative Biosciences (QB3), UCB, UCSC, UCSF, San Francisco, USA, 14 February 2011
From stochastic optimization to more efficient simulation algorithms
Seminar, Center for Turbulence Research (CTR), Stanford University, Stanford, USA, 11 February 2011
From Bio-Images to Dynamical Models
Invited talk, Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn (VA), USA, 7 February 2011
Fitness Landscapes, Optimization, and Parameter Identification in Biochemical Networks
Invited talk, Swiss Institute of Bioinformatics Days 2011, Biel/Bienne, Switzerland, 1 February 2011
Image-based systems biology: Modeling and simulation in image-derived geometries
Invited talk, USGEB Meeting 2011, "Imaging Life", Union of Swiss Societies for Experimental Biology, Zurich, Switzerland, 27 January 2011
Spatial dynamics and modeling of viral infection in two-dimensional cell arrays
Poster, USGEB meeting, Union of Swiss Societies for Experimental Biology, Zurich, Switzerland, 27 January 2011
2010
Intrinsically disordered regions may lower the hydration free energy in proteins: A case study of nudix hydrolase in the bacterium Deinococcus radiodurans
Toward an object-oriented core of the PPM library
Proc. ICNAAM, Numerical Analysis and Applied Mathematics, International Conference, 1313–1316, 2010
A Lagrangian particle method for reaction-diffusion systems on deforming surfaces
Spatial Dynamics Modeling of Viral Infection using Cellular Automata and Particle Strength Exchange
MOSAIC Group, ETH Zurich, 2010 (Master thesis)
Beyond co-localization: inferring spatial interactions between sub-cellular structures from microscopy images
Computational Methods for Analyzing and Simulating Intra-Cellular Transport Processes
Tug-of-War Model for Intracellular Motion of Vesicles
Design and Implementation of Parallel Island Models for CMA-ES
MOSAIC Group, ETH Zurich, 2010 (Master thesis)
Tracking cells in phase contrast light microscopic images
MOSAIC Group, ETH Zürich, 2010 (Diploma thesis)
BFGS in memetic CMA-ES
Gaussian adaptation revisited — an entropic view on covariance matrix adaptation
Gaussian Adaptation as a unifying framework for continuous black-box optimization and adaptive Monte Carlo sampling
Exploring the common concepts of adaptive MCMC and Covariance Matrix Adaptation schemes
Black-box Landscapes: Characterization, Optimization, Sampling, and Application to Geometric Configuration Problems
pCMALib – Manual for version 1.0
pCMALib – Manual for version 1.0
Antimicrobial peptides induce growth of phosphatidylglycerol domains in a model bacterial membrane
Diffusion in the ribosomal tunnel – geometric impacts of the tunnel
MOSAIC Group, ETH Zürich, 2010 (Semester thesis)
A partial-propensity variant of the composition-rejection stochastic simulation algorithm for chemical reaction networks
Fast exact stochastic simulation algorithms using partial propensities
Proc. ICNAAM, Numerical Analysis and Applied Mathematics, International Conference, 1338–1341, 2010
Abstractions and middleware for petascale computing and beyond
Discretization correction of general integral PSE operators in particle methods
Discretization-Corrected PSE Operators for Particle Methods
Burgers’ Equation with Adaptive Particles
Computational Analysis of Spatial Point Patterns for Cell Organelles
MOSAIC Group, ETH Zurich, 2010 (Master thesis)
Spatial dynamics modeling of viral infection in two-dimensional cell arrays
7th International Conference on Bioinformatics of Genome Regulation and Structure (BGRS), 2010
Cell Edge Dynamics during Polarization
Conference talk, NCCBI meeting of the National Competence Center for Biomedical Imaging, Lausanne, Switzerland, 29 November 2010
Discretization-corrected particle methods for adaptive multi-resolution simulations of PDEs on parallel computers
Seminar, Department of Mathematics, University of Fribourg, Fribourg, Switzerland, 5 October 2010
Particle-based simulations in image-derived geometries
Invited talk, European Molecular Biology Laboratory (EMBL), EMBO Practical Course "Microscopy, Modelling and Biophysical Methods", Heidelberg, Germany, 1 October 2010
Plasma membrane tension and actin-dependent protrusion forces in migrating cells
Poster, SystemsX.ch PhD Student Retreat, Murten, Switzerland, 30 September 2010
Efficient simulation of coupled chemical reaction networks using partial-propensity methods
Conference talk, 8th International Conference on Numerical Analysis and Applied Mathematics (ICNAAM), Rhodes, Greece, 19 September 2010
Discretization-Corrected PSE Operators for Particle Methods
Conference talk, 8th Euromech Fluid Mechanics Conference (EFMC8), Bad Reichenhall, Germany, 13 September 2010
My Life and Science
Keynote, Molecular Life Science (MLS) Zurich graduate school student retreat, Chandolin, Switzerland, 4 September 2010
Computational method for investigating the mechanisms of cell motility
Poster, Life Science Symposium 2010, EPFL, Lausanne, Switzerland, 2 September 2010
Tracking
Invited talk, Friedrich Miescher Institute - SyBIT summer school on image processing, Männedorf, Switzerland, 1 September 2010
Computational Methods for Studying Endocytic Transport Processes
Invited talk, "Emmy-Noether Research Group" (Dr. Mario Schelhaas), Center for Molecular Biology of Inflamation, Westfälische Wilhelms-Universität Münster, Münster, Germany, 3 August 2010
Gaussian Adaptation as a unifying framework for continuous black-box optimization and adaptive Monte Carlo sampling
Conference talk, IEEE Congress on Evolutionary Computation (CEC) 2010, Barcelona, Spain, 18 July 2010
A new class of highly efficient exact stochastic simulation algorithms for chemical reaction networks
Invited talk, Basel Computational Biology Conference (BC2), SIB best graduate paper award talk, Basel, Switzerland, 25 June 2010
Plasma membrane tension and actin-dependent protrusion forces in migrating cells
Conference talk, Swiss Soft Day 2, Conference on soft matter physics, EPFL, Lausanne, Switzerland, 23 June 2010
Spatial dynamics modeling of viral infection in two-dimensional cell arrays
Poster, International Conference on Bioinformatics of Genome Regulation and Structure, Novosibirsk, Russia, 20 June 2010
Evolutionary origin of ageing and phenotypic variability
Invited talk, Institute for Ageing and Health, Newcastle University, Newcastle, UK, 14 June 2010
Including prior knowledge in segmentation and tracking algorithms
Invited talk, Janelia Farm, Howard Hughes Medical Institute, Ashburn (VA), USA, 11 May 2010
Gaussian adaptation revisited — an entropic view on covariance matrix adaptation
Conference talk, EvoStar Joint European Conference on Evolutionary Computation, Istanbul, Turkey, 7 April 2010
Computational method for investigating the mechanisms of cell motility
Poster, Studying biomolecules by experiment and theory: a biophysicist's view, Crans Montana, Switzerland, 14 February 2010
2009
Bayesian image analysis with on-line confidence estimates and its application to microtubule tracking
Statistical analysis of fitness values in CMA-ES
MOSAIC Group, ETH Zurich, 2009 (Master thesis)
Shape reconstruction of subcellular structures from live cell fluorescence microscopy images
Deconvolving active contours for fluorescence microscopy images
Bias Reduction of Centroid Detection
Stochastic Simulation of Reacting Particles
GFRD implementation
Global Optimization of Lennard Jones Clusters with PS-CMA-ES
Particle swarm CMA evolution strategy for the optimization of multi-funnel landscapes
pCMALib: a parallel FORTRAN 90 library for the evolution strategy with covariance matrix adaptation
Proc. ACM Genetic and Evolutionary Computation Conference (GECCO’09), 2009
Benchmark runs of pCMALib on Nehalem and Shanghai nodes
In the eye of the beholder: Inhomogeneous distribution of high-resolution shapes within the random-walk ensemble
A tunable real-world multi-funnel benchmark problem for evolutionary optimization (and why parallel island models might remedy the failure of CMA-ES on it)
Proc. Intl. Joint Conf. Computational Intelligence (IJCCI), 248–253, 2009
CMA-ES and its application to potential energy landscapes
MOSAIC Group, ETH Zurich, 2009 (Diploma thesis)
A new class of highly efficient exact stochastic simulation algorithms for chemical reaction networks
Bioinformatical analysis of extraordinarily large, prokaryotic proteins
INSERM Paris, ETH Zürich, and TU Munich, 2009 (Master thesis)
Analysis, Modeling & Simulation of Diffusion Processes in Cell Biology
Spatiotemporal Modeling and Simulation in Biology
Relationship of the corrected PSE operator to finite difference schemes
Large-scale parallel discrete element simulations of granular flow
Studying protein‐protein interactions using computer simulations: from specific effects to protein ecology
Proc. 3rd Adriatic Meeting on Computational Solutions in the Life Sciences, 23, 2009 (ISBN: 978-953-6690-80-0)
Thermophoretic motion of water nanodroplets confined inside carbon nanotubes
A new class of highly efficient exact stochastic simulation algorithms for chemical reaction networks
Seminar, Biomedical Engineering Seminar, ETH Zurich, Zurich, Switzerland, 15 December 2009
Nanometer-precision reconstruction and characterization of the shapes and dynamics of endosomes in live cells
Invited talk, University of Geneva, Geneva, Switzerland, 10 December 2009
Dissecting the Mechanism of Nuclear Migration in S. cerevisiae
Poster, The American Society for Cell Biology Annual Meeting (ASCB), San Diego, USA, 5 December 2009
Deconvolving active contours for fluorescence microscopy images
Conference talk, International Symposium on Visual Computing (ISVC), Las Vegas, USA, 30 November 2009
A new class of highly effi-cient exact stochastic simulation algorithms for chemical reaction net-works
Poster, All-SystemsX.ch day, Bern, Switzerland, 18 November 2009
Gaussian Adaptation revisited - an entropic view on Covariance Matrix Adaptation
Conference talk, 3rd Workshop on Theory of Randomized Search Heuristics (TRSH), Birmingham, UK, 19 October 2009
Reducing the time complexity of chemical reaction-network simulations to O(N)
Invited talk, Institute of Theoretical Computer Science, University of Birmingham, Birmingham, UK, 16 October 2009
A tunable real-world multi-funnel benchmark problem for evolutionary optimization (and why parallel island models might remedy the failure of CMA-ES on it)
Conference talk, International Conference on Evolutionary Computation (ICEC), Funchal, Madeira, Portugal, 5 October 2009
New Developments in Imaging and Simulation for Computational Biology
Invited talk, Moscow State University, Moscow, Russia, 29 September 2009
Searching potential energy surfaces with the Covariance Matrix Adaptation Evolution Strategy
Conference talk, CCP5 Conference on Structure Prediction, London, UK, 7 September 2009
Computational methods for investigating the mechanism of cell motility
Poster, FEBS Course on Computational Biology, Split, Croatia, 2 August 2009
pCMALib: a Parallel FORTRAN 90 Library for the Evolution Strategy with Covariance Matrix Adaptation
Conference talk, ACM Genetic and Evolutionary Computing Conference (GECCO) 2009, Montréal, Canada, 8 July 2009
Bayesian image analysis with on-line confidence estimates and its application to microtubule tracking
Poster, IEEE International Symposium on Biomedical Imaging (ISBI) 2009, Boston, USA, 27 June 2009
A new class of highly efficient exact stochastic simulation algorithms for chemical reaction networks
Invited talk, CECAM workshop on Computational Systems Biology, Lausanne, Switzerland, 25 June 2009
Ageing as a consequence of re-emergent conflicts between two levels
Seminar, University of Oxford, Department of Statistics, Oxford, UK, 4 June 2009
Particle swarm CMA evolution strategy for the optimization of multi-funnel landscapes
Conference talk, IEEE Congress on Evolutionary Computation (CEC) 2009, Trondheim, Norway, 18 May 2009
Reconstruction and characterization of the shapes and dynamics of sub-cellular structures in live cells
Invited talk, Janelia Farm, Howard Hughes Medical Institute, Ashburn (VA), USA, 7 April 2009
Binding dynamics of SV40 virus capsids to GM1 glycolipid-receptor membranes
Poster, International Conference on Information Processing in Cells and Tissues (IPCAT) 2009, Locarno, Switzerland, 5 April 2009
Die Bedeutung der Informatik in der modernen Biologie
Outreach, Public lecture, Technical Society of Zurich (TGZ), Zurich, Switzerland, 23 March 2009
The evolutionary origin of aging and heredity laws : insights from physiologically-structured cell division models
Invited talk, Institut Henri Poincaré, Paris, France, 3 March 2009
Using FRAP to measure diffusion constants in complex-shaped compartments
Seminar, Laboratory of Physical Chemistry of Polymers and Membranes, EPFL, Lausanne, Switzerland, 3 March 2009
Using FRAP to measure diffusion constants in complex-shaped compartments
Invited talk, Chair of Systems Biology, University of Edinburgh, Edinburgh, UK, 20 February 2009
A biophysical model describing the growth dynamics and size distribution of protein domains in biological membranes
Poster, Swiss Institute of Bioinformatics Scientific Meeting, Fribourg, Switzerland, 2 February 2009
Bayesian image analysis for tracking of astral microtubules with confidence estimation
Poster, Swiss Institute of Bioinformatics Scientific Meeting, Fribourg, Switzerland, 2 February 2009
Particle Swarm CMA Evolution Strategy for the Optimization of Multi-Funnel Landscapes
Poster, Swiss Institute of Bioinformatics Scientific Meeting, Fribourg, Switzerland, 2 February 2009
Role of lipid composition on the hydration barrier to mixed-lipid-membrane fusion
Poster, Swiss Institute of Bioinformatics Scientific Meeting, Fribourg, Switzerland, 2 February 2009
Using spatial point patterns to extend colocalization analysis to interaction analysis
Poster, Swiss Institute of Bioinformatics Scientific Meeting, Fribourg, Switzerland, 2 February 2009
2008
Structural adaptation of nudix hydrolase in the desiccation resistant bacterium deinococcus radiodurans
Computational Biophysics Lab (CBL), Institute of Computational Science (ICoS), ETH Zürich, 2008 (Master thesis)
Particle swarm CMA-ES
Computational Biophysics Lab (CBL), Institute of Computational Science (ICoS), ETH Zürich, 2008 (Diploma thesis)
Atomistic molecular dynamics simulation of 2-component Newton black films
MOSAIC Group, ETH Zurich, 2008 (Bachelor thesis)
Event-based prediction of the foreign exchange market using news text classification
Computational Biophysics Lab (CBL), Institute of Computational Science (ICoS), ETH Zürich, 2008 (Master thesis)
Discretization correction for the PSE operator
Some notes on the convergence of the corrected discrete integral operator Qε∗g towards Dg = ∇ · (L(x) · ∇g(x)) and implications for its suitability for solving the EEG/MEG forward problem
The corrected discrete integral operator Qε∗g as an approximation to Dg = ∇ · (L(x) · ∇g(x)) for random particle distributions
Corrected discrete Eldredge operators Lβ∗g as an approximation to the derivative ∂βg for random particle distributions
The error Dg − Qεhg for some one-dimensional functions g(x)
Software for efficient quantification of FRAP experiments
Computational Biophysics Lab (CBL), Institute of Computational Science (ICoS), ETH Zürich, 2008 (Diploma thesis)
Classification of anaesthesia data using support vector machines
Computational Biophysics Lab (CBL), Institute of Computational Science (ICoS), ETH Zürich, 2008 (Semester thesis)
Atomistic simulations of thermophoresis in carbon nanotubes
Atomistic simulations of thermophoretic motion of water nanodroplets in carbon nanotubes
Spatiotemporal Modelling and Simulation in Biology
Invited talk, Royal Society of Edinburgh, Edinburgh, UK, 26 November 2008
Atomistic simulations of thermophoresis in carbon nanotubes
Conference talk, 5th international congress of Nano-Bio & Clean Tech, San Francisco, USA, 27 October 2008
A biophysical model describing the growth dynamics and size distribution of protein domains in biological membranes
Poster, All SystemsX.ch day, Basel, Switzerland, 16 October 2008
Atomistic simulations of thermophoretic motion of water nanodroplets in carbon nanotubes
Conference talk, 21st Nordic Seminar on Computational Mechanics, Trondheim, Norway, 16 October 2008
A molecular dynamics study of supercooled Newton black films
Invited talk, UK Science & Technology Facilities Council CCP5 Annual Meeting, Surfaces and Interfaces, London, UK, 9 September 2008
A molecular dynamics study of supercooled biological water
Poster, Water and Aqueous Solutions Gordon Research Conference, New Hampshire, USA, 27 July 2008
A supercooled perspective of the hydration force between biological surfaces
Invited talk, Centre for Polymer Studies pre-Gordon Conference Water Meeting 2008, Boston University, Boston, MA, USA, 26 July 2008
Computational Biophysics: Research at the Interface between Computer Science, Physics, and Biology
Invited talk, Technical University of Munich, Munich, Germany, 26 June 2008
Automated analysis and large-scale computer simulations of dynamic processes in biology
Keynote, D-BIOL Symposium, Davos, Switzerland, 3 June 2008
A model to describe the growth kinetics and distribution of multimeric protein domains on plasma membranes: Towards biophysical understanding of the establishment of the preapical patch during lumen formation in MDCK cells
Poster, D-BIOL Symposium, Davos, Switzerland, 2 June 2008
Nanometer-precision computational reconstruction of sub-cellular shapes in live cell light microscopy
Keynote, European Light Microscopy Conference (ELMI08), Davos, Switzerland, 30 May 2008
Robust bio-inspired optimization and its application to biochemical networks
Invited talk, Zentrum für Bioinfomatik Kolloquium, Tübingen, Germany, 30 May 2008
Adaptation of prokaryotic proteomes to different lifestyles
Poster, Scientific Advisory Board Meeting, Mediterranean Institute for Life Sciences, Split, Croatia, 5 April 2008
Bringing Science to Society
Poster, Scientific Advisory Board Meeting, Mediterranean Institute for Life Sciences, Split, Croatia, 5 April 2008
Proteome Adaptations
Invited talk, Mediterranean Institute for Life Sciences, Split, Croatia, 5 April 2008
The B3C group
Seminar, Mediterranean Institute for Life Sciences, Split, Croatia, 1 March 2008
Towards a combination of Evolution Strategies, Particle Swarm Optimization and Parameter Sensitivity Analysis
Invited talk, Associate Institute for Signal Processing, TU München, München, Germany, 29 February 2008
On the electrostatics of hydrated lipid films
Invited talk, Mediterranean Institute for Life Sciences, Split, Croatia, 14 January 2008
2007
Pre-fractal structure of the ER
Computational Biophysics Lab (CBL), Institute of Computational Science (ICoS), ETH Zürich, 2007 (Semester thesis)
Systems identification of an impossible system: An empirical study of models for stock market prediction
Computational Biophysics Lab (CBL), Institute of Computational Science (ICoS), ETH Zürich, 2007 (Bachelor thesis)
Image-based analysis of cell division
Computational Biophysics Lab (CBL), Institute of Computational Science (ICoS), ETH Zürich, 2007 (Master thesis)
Stochastic and Physical Dynamical Models of Virus Motility
Computational Biophysics Lab (CBL), Institute of Computational Science (ICoS), ETH Zürich, 2007 (Master thesis)
A novel supervised trajectory segmentation algorithm identifies distinct types of human adenovirus motion in host cells
Journal of Structural Biology 159(3):347–358, 2007
Parameter sensitivity analysis and optimization of an agent based psychological model
Computational Biophysics Lab (CBL), Institute of Computational Science (ICoS), ETH Zürich, 2007 (Semester thesis)
Global Suppressor Mutations (GSM) in terms of structural and physico-chemical properties and implications for future projects
Computational Biophysics Lab (CBL), Institute of Computational Science (ICoS), ETH Zürich, 2007 (Semester thesis)
Sensitivities for free: CMA-ES based sensitivity analysis
Abstracts of the 5th International Conference on Sensitivity Analysis of Model Output (SAMO), 123–124, 2007
Informatik und Biologie – Eine Symbiose ermöglicht neue Entdeckungen
Vierteljahresschrift der Naturforschenden Gesellschaft in Zurich 152(3):63–70, 2007 (invited, in German)
Systems identification of an impossible system: An empirical study of models for stock market prediction
Computational Biophysics Lab (CBL), Institute of Computational Science (ICoS), ETH Zürich, 2007 (Semester thesis)
Adaptation to extreme environments – looking for the proteome patterns
Proc. 2nd Adriatic meeting on Computational Solutions in the Life Sciences, 85, 2007
Parameter sensitivity analysis of TCR activated signal transduction netwroks
University of Zagreb, Faculty of Food Technology and Biotechnology and Computational Biophysics Lab (CBL), Institute of Computational Science (ICoS), ETH Zürich, 2007 (Diploma thesis 4538/BI)
Systems biology markup language: Case study of T-cell signal transduction network
Proceedings of the 29th International Conference on Information Technology Interfaces (ITI07), 651–656, 2007
Towards a prediction model of morphological changes during suborgan structure development
University of Lübeck, Institute of Mathematics, and ETH Zürich, Computational Biophysics Lab (CBL) and Institute of Biochemistry, 2007 (Master thesis)
Feature point tracking based on a recursive Bayesian method
Computational Biophysics Lab (CBL), Institute of Computational Science (ICoS), ETH Zürich, 2007 (Bachelor thesis)
Automated analysis and large-scale computer simulations of dynamic processes in biology
Seminar, Institute for Biochemistry II, Molecular Signaling Group, Johann Wolfgang Goethe University Frankfurt am Main, Frankfurt am Main, Germany, 1 October 2007
Computational Biophysics
Conference talk, Swiss Institute of Bioinformatics Scientific Meeting, Grindelwald, Switzerland, 24 September 2007
Sensitivities for free: CMA-ES based Sensitivity Analysis
Poster, Swiss Institute of Bioinformatics Scientific Meeting, Grindelwald, Switzerland, 24 September 2007
A model to predict maturity and morphological changes during epithelial cyst development
Poster, SystemsX meeting, Lausanne, Switzerland, 17 September 2007
Adaptation to extreme environments - looking for the proteome patterns
Poster, 2nd Opatija Meeting On Computational Solutions in the Life Sciences, Opatija, Croatia, 4 September 2007
Large-scale Parallel Discrete Element Simulations of Granular Flow
Conference talk, International Conference on Discrete Element Methods (DEM07), Brisbane, Australia, 27 August 2007
Computational Dissection of Adenovirus Cell Surface Motion Reveals Receptor Mediated Virus Drifting on Filopodia
Conference talk, The American Society for Cell Biology Summer Meeting (ASCB-ECF), Dijon, France, 27 June 2007
Informatik und Biologie – Eine Symbiose ermöglicht neue Entdeckungen (in German)
Invited talk, ETH Homecoming Day, Zurich, Switzerland, 23 June 2007
Sensitivities for free: CMA-ES based Sensitivity Analysis
Poster, Fifth International Conference on Sensitivity Analysis of Model Output (SAMO07), Eötvös University (ELTE), Budapest, Hungary, 18 June 2007
Software Challenges for Petaflop Computing
Invited talk, Sandia, Oak Ridge, Switzerland Conference on Supercomputing (SOS11), 13 June 2007
Software Chellenges for Petaflop Computing
Conference talk, 11th Sandia, Oak Ridge, Switzerland Conference on Supercomputing (SOS11), Key West, Florida, USA, 11 June 2007
Parameter optimization and sensitivity analysis of an agent-based model in social psychology
Invited talk, System Gestaltung (SG) Seminar, ETH Zürich, Zurich, Switzerland, 25 May 2007
Sensitivities for free - Sensitivity Analysis based on the CMA - Evolution Strategy
Invited talk, Zurich Interaction Seminar (ZIS), ETH Zürich, Zurich, Switzerland, 21 May 2007
Informatik und Biologie – Eine Symbiose ermöglicht neue Entdeckungen (in German)
Outreach, Swiss Olympics for Informatics, 17 March 2007
Computational dissection of adenovirus cell surface motion reveals receptor mediated virus drifting on filopodia
Conference talk, Basel Computational Biology Conference (BC2), Basel, Switzerland, 13 March 2007
Parameter Sensitivities and Configurational Entropies
Invited talk, CRI Computing Club, University Paris V, Paris, France, 9 March 2007
Entropic stability of structural motifs in proteins
Seminar, EPFL, Lausanne, Switzerland, 16 February 2007
Portable parallelization of hybrid particle-mesh methods
Seminar, EPFL, Lausanne, Switzerland, 16 February 2007
2006
Reaction-diffusion problem with concentration driven deformation
Analysis, Modeling, and Simulation of Diffusion Processes in Cell Biology
Simulations of (an)isotropic diffusion on curved biological surfaces
PPM – A Highly Efficient Parallel Particle-Mesh Library for the Simulation of Continuum Systems
A Software Framework for Portable Parallelization of Particle-Mesh Simulations
Proc. Euro-Par European Conference on Parallel Computing 4128:730–739, 2006
Informatik und Biologie – eine Symbiose ermöglicht neue Entdeckungen (in German)
Invited talk, Inaugural lecture, ETH Zurich, Zurich, Switzerland, 18 December 2006
Computational Dissection of Adenovirus Motion on the Cell Surface
Poster, 46th annual meeting of the American Society for Cell Biology (ASCB), San Diego, California, USA, 9 December 2006
Wie funktionieren Zellen? - Informatik und Biologie bilden ein Team
Outreach, Public lecture, 25th anniversary of the Department of Computer Science at ETH Zurich, Zurich, Switzerland, 22 October 2006
Single-Particle Tracking and Automated Trajectory Analysis from Image Data
Poster, 50th anniversary of the Institute of Biochemistry at ETH Zurich, Zurich, Switzerland, 5 October 2006
A software framework for portable parallelization of particle-mesh simulations
Conference talk, European Conference on Parallel Computing (Euro-Par), Dresden, Germany, 29 August 2006
Analysis, Modeling, and Simulation of Diffusion Processes in Cell Biology
Seminar, Université de Paris V, Department of Medicine, and INSERM, Paris, France, 13 April 2006
2005
Single particle tracking of murine polyomavirus-like particles on live cells and artificial membranes
Proc. Natl. Acad. Sci. USA 102(42):15110–15115, 2005
Download PDFSupplementary MaterialF1000To the repository 1, 2, 3
Data analysis and machine learning for virus trajectories
Institute of Computational Science (ICoS), ETH Zürich, 2005 (Semester thesis)
Septin-dependent compartmentalization of the endoplasmic reticulum during yeast polarized growth
A fast multipole method (FMM) implementation for the parallel particle mesh library (PPM)
Institute of Computational Science, 2005 (Semester thesis)
Effects of Organelle Shape on Fluorescence Recovery after Photobleaching
Feature Point Tracking and Trajectory Analysis for Video Imaging in Cell Biology
Why diffusion on a domain with complex boundary appears anomalous
Heimtückische Viren auf lebenden Zellen
Moments of displacement and their spectrum
Large-scale simulations of diffusion in organelles of live cells
Seminar, Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany, 19 December 2005
2004
Investigating the influence of optical anisotropy in microscopy
Institute of Computational Science (ICoS), ETH Zürich, 2004 (Diploma thesis)
Lattice-Boltzmann simulations of colloid entrapment in amphiphilic mesophases: algorithm development and preliminary tests
GUI client for a remote particle tracking server
Institute of Computational Science (ICoS), ETH Zürich, 2004 (Semester thesis)
High order accurate numerical solution of the linearized Euler equations for sound propagation in the atmosphere
A boundary integral solver for the parallel particle mesh library & An implementation of the CHARMS framework
Institute of Computational Science (ICoS), ETH Zürich, 2004 (Diploma thesis)
Large-Scale Simulations of Diffusion in Cell Biology
Alternate endocytic pathways revealed by virus entry into animal cells
Molecular Biology of the Cell 15:195A, 2004
Automated trajectory acquisition and analysis
Seminar, Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany, 12 July 2004
2003
Automatic data encoding optimization for machine learning applications
Institute of Computational Science (ICoS), ETH Zürich, 2003 (Semester thesis)
Data mining and machine learning for virus trajectory analysis
Institute of Computational Science (ICoS), ETH Zürich, 2003 (Semester thesis)
Image processing and particle tracking for biological applications
Institute of Computational Science (ICoS), ETH Zürich, 2003 (Semester thesis)
Lumped parameter models for ER diffusion in budding yeast cells
A MATLAB toolbox for virus particle tracking
Automated virus trajectory acquisition
Conference talk, 4th International Conference on Systems Biology (ICSB), Washington University, St. Louis, USA, 5 November 2003
Measuring Diffusion in Intracellular Compartments: Computer Simulations reveal Influence of Organelle Geometry
Poster, 4th International Conference on Systems Biology (ICSB), Washington University, St. Louis, USA, 5 November 2003
Model-based quantitative evaluation of FLIP experiments in budding Yeast
Poster, 4th International Conference on Systems Biology (ICSB), Washington University, St. Louis, USA, 5 November 2003
Computing diffusion in intracellular compartments: The influence of organelle geometry
Conference talk, New Horizons in Molecular Sciences and Systems: An Integrated Approach, Nago City, Okinawa, Japan, 16 October 2003
Automated virus trajectory acquisition
Conference talk, European Life Scientists Organization (ELSO) Meeting, Dresden, Germany, 20 September 2003
Automated virus trajectory acquisition and classification
Conference talk, Joining Forces: Intersections between Biology, Chemistry, Engineering and Informatics, ETH Zurich, Zurich, Switzerland, 18 March 2003
2002
Optimization of cylinder flow control via zero net mass flux actuators
Organelle shape has an influence on fluorescence recovery results
Diffusion in the Endoplasmic Reticulum: Theoretical foundation, computer simulations, models
Machine Learning for Biological Trajectory Classification Applications
Diffusion in the Endoplasmic Reticulum – Computer Simulations and Models
Poster, European Life Scientists Organization (ELSO) Meeting, Nice, France, 29 June 2002
2001
Evolution Strategies for the Optimization of Microdevices
Evolution Strategies for Computational and Experimental Fluid Dynamics Applications. L. Spector, E. Goodman, A. Wu, W.B. Langdon, H.-M. Voigt, M. Gen, S. Sen, M. Dorigo, S. Pezeshk, M. Garzon, and E. Burke, editors
On Protein Diffusion in the Endoplasmic Reticulum: A computational approach using particle simulations
Microchannel Optimization Using Multiobjective Evolution Strategies
2000
Optimization of trailing vortex destruction by evolution strategies
Evolutionary Optimization of Mixing Microdevices
Evolutionary Optimization for Flow Experiments
CTR Annual Research Briefs 2000, Center for Turbulence Research, Stanford University, 2000
Multiobjective Optimization using Evolutionary Algorithms
1998
Apparatus for feeding or withdrawing heat into or from body - comprises thermoelectric converter element and heat-conducting dielectric
International Patents WO9904439-A; WO9904439-A1; AU9879042-A, 1998
1997
Thermoelektrisches Wandlerelement hohen Wirkungsgrades
Schweizer Patent P111534CH, 1731/97, 1997